Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01016323.1 Corchorus capsularis cultivar CVL-1 contig16344, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2384
ACGTcount: A:0.35, C:0.22, G:0.15, T:0.28


Found at i:1751 original size:6 final size:6

Alignment explanation


    Indices: 1731--1773  Score: 72
    Period size: 6  Copynumber: 7.5  Consensus size: 6

       1721 AAAGTAAAGC

                                                                
       1731 AAATC- AAAT-T AAATCT AAATCT AAATCT AAATCT AAATCT AAA
          1 AAATCT AAATCT AAATCT AAATCT AAATCT AAATCT AAATCT AAA

       1774 GCAAATTAAT


Statistics
Matches: 36,  Mismatches: 0, Indels: 3
        0.92            0.00        0.08

Matches are distributed among these distances:
   5    8  0.22
   6   28  0.78

ACGTcount: A:0.56, C:0.14, G:0.00, T:0.30


Consensus pattern (6 bp):   
AAATCT

Done.