Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01016324.1 Corchorus capsularis cultivar CVL-1 contig16345, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  90306

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2690--2723
17
2.0
17
94
0
59
55
14
5
23
1.61
8871--9156
141
2.0
141
100
0
572
42
22
20
14
1.88
10141--10174
12
2.8
12
90
0
59
29
26
32
11
1.92
16397--16432
19
1.9
18
88
5
54
41
2
22
33
1.68
23077--23177
43
2.3
43
93
0
166
25
42
22
8
1.83
26335--26370
19
1.9
18
88
5
54
41
2
22
33
1.68
28675--28708
17
2.0
17
94
0
59
55
14
5
23
1.61
30267--30368
33
3.1
33
81
2
125
27
9
18
44
1.81
32289--32351
32
2.0
32
90
0
99
36
22
19
22
1.95
32399--32467
24
2.9
24
82
8
86
24
28
34
11
1.91
32508--32556
24
2.0
24
92
0
80
22
22
26
28
1.99
32732--33371
36
17.4
36
86
5
686
43
10
20
24
1.84
36516--36578
30
2.1
30
91
5
101
30
15
33
20
1.94
40124--40167
22
2.0
22
86
0
61
29
25
22
22
1.99
40865--40892
12
2.3
12
100
0
56
85
0
0
14
0.59
42273--42359
33
2.6
33
83
7
113
24
8
24
43
1.80
42357--42505
33
4.6
33
85
4
198
30
8
18
42
1.81
44621--44664
22
2.0
22
86
0
61
29
25
22
22
1.99
59526--59594
27
2.6
27
95
0
120
26
27
4
42
1.74
65102--65128
6
4.5
6
100
0
54
55
14
0
29
1.40
65125--65172
13
3.7
13
97
0
87
60
8
10
20
1.55
66095--66119
10
2.5
10
100
0
50
24
8
20
48
1.76
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
68974--69057
38
2.1
41
89
6
129
48
5
11
33
1.64
69346--69372
6
4.5
6
100
0
54
55
14
0
29
1.40
69369--69403
13
2.7
13
95
0
61
60
8
11
20
1.57
72268--72343
33
2.3
33
100
0
152
44
19
11
23
1.84
72369--72473
33
3.2
33
80
2
131
46
20
7
25
1.76
76704--77053
49
7.2
49
90
0
477
30
14
32
22
1.93
89742--89780
14
2.7
15
80
8
53
48
10
7
33
1.66

Tables:   1

The End!