Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01016326.1 Corchorus capsularis cultivar CVL-1 contig16347, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  18224

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
475--827
49
7.2
49
86
2
404
24
32
13
30
1.93
6614--6687
32
2.3
32
83
0
103
27
22
18
31
1.98
7383--7418
13
2.8
13
95
0
63
0
41
0
58
0.98
7377--7408
13
2.3
15
89
10
50
0
43
0
56
0.99
7411--7453
20
2.2
20
100
0
86
13
25
4
55
1.58
7714--7772
9
6.3
9
92
7
100
20
1
30
47
1.60
7716--7778
29
2.2
29
100
0
126
22
3
31
42
1.69
8735--8779
13
3.3
13
85
11
63
42
0
17
40
1.50
8738--8769
15
2.1
15
94
0
55
46
0
15
37
1.46
9867--9894
10
2.8
10
100
0
56
85
7
0
7
0.73
15584--15698
27
4.3
27
92
4
196
20
43
16
20
1.88
18076--18155
32
2.5
32
97
0
151
32
23
21
22
1.98

Tables:   1

The End!