Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01016328.1 Corchorus capsularis cultivar CVL-1 contig16349, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  29760

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
327--461
33
4.1
33
89
4
177
20
41
31
6
1.78
1005--1119
61
1.9
61
83
1
151
40
22
17
20
1.92
881--1331
166
2.7
166
97
0
852
34
19
22
24
1.96
1988--2036
25
2.0
25
88
11
75
8
28
20
42
1.80
4684--4708
13
1.9
13
100
0
50
84
0
16
0
0.63
4843--4892
24
2.1
24
96
0
91
44
16
16
24
1.86
6488--6546
7
7.9
8
76
17
56
22
1
1
74
1.00
6488--6559
14
5.0
15
80
9
71
23
2
1
72
1.06
6514--6559
7
6.6
7
87
7
67
26
2
0
71
0.97
13257--13288
2
16.0
2
100
0
64
50
50
0
0
1.00
16879--16903
11
2.3
11
100
0
50
16
0
0
84
0.63
17060--17126
5
12.8
5
90
7
98
40
0
1
58
1.07
17963--18037
13
5.8
13
75
9
64
56
2
0
41
1.13
17966--18036
17
4.1
17
78
10
72
56
2
0
40
1.14
18100--18145
3
14.7
3
91
8
74
65
0
0
34
0.93
23197--23341
72
2.0
72
95
0
263
22
15
15
46
1.83
26263--26307
4
11.2
4
100
0
90
26
0
24
48
1.51

Tables:   1

The End!