genome.fa.s16330.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01016330.1 Corchorus capsularis cultivar CVL-1 contig16351, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  58821

Tables:   1   

This is table  1  of  1  ( 47 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4004--4032	10	2.9	10	100	0	58	10	48	10	31	1.71
10995--11050	26	2.1	27	90	3	87	37	23	14	25	1.92
11793--12214	51	8.3	51	77	5	331	42	6	14	36	1.71
11793--12163	151	2.4	151	77	3	377	41	6	14	37	1.72
12768--12799	15	2.1	15	94	0	55	18	28	6	46	1.73
15622--15658	18	2.1	18	100	0	74	32	21	18	27	1.97
18195--18224	15	1.9	16	93	6	53	23	3	0	73	0.98
20169--20309	42	3.4	42	92	2	214	42	12	18	26	1.86
20339--20454	61	1.9	61	90	0	187	40	11	20	27	1.86
20477--21175	45	15.6	45	90	1	1057	45	13	16	24	1.83
21335--21419	37	2.5	34	81	11	102	42	11	21	24	1.86
21353--21444	37	2.5	37	92	1	157	41	7	27	23	1.81
21368--21471	37	3.1	33	80	12	122	40	10	25	24	1.87
21482--21667	36	5.1	36	85	5	232	40	11	18	29	1.85
21469--21667	73	2.7	73	88	3	287	40	11	19	28	1.86
22192--23302	41	26.3	41	77	9	848	14	27	20	37	1.92
22408--23264	88	9.9	88	81	8	802	15	27	19	38	1.91
22192--23261	344	3.2	336	82	8	1176	15	27	20	37	1.92
23007--23220	89	2.4	89	86	4	283	14	26	19	39	1.91
27033--27250	32	7.5	31	69	25	156	38	27	12	20	1.89
27006--27280	58	4.8	58	92	1	430	38	27	13	20	1.91
27007--27280	26	9.7	26	68	26	134	37	27	13	20	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27181--27277	27	3.6	27	71	19	85	41	26	13	18	1.88
27027--27286	32	9.1	26	67	25	104	38	26	13	21	1.90
34920--34961	8	5.4	8	78	16	52	50	30	0	19	1.48
34913--34961	15	3.2	15	88	2	71	48	30	2	18	1.59
39668--39704	19	2.0	18	89	5	56	29	21	8	40	1.82
47126--47155	2	15.5	2	93	6	53	50	0	0	50	1.00
47979--48012	15	2.4	14	90	5	50	32	41	0	26	1.56
47994--48057	35	1.9	34	84	9	87	32	29	0	37	1.58
48093--48136	11	3.6	11	78	21	52	52	11	0	36	1.38
48083--48150	26	2.6	26	95	4	120	52	11	1	33	1.47
48083--48150	15	5.1	15	73	26	64	52	11	1	33	1.47
48254--48353	33	3.0	33	85	2	130	19	30	37	14	1.90
48540--48584	21	2.1	21	95	0	81	31	8	42	17	1.80
49583--49653	35	2.0	35	91	0	115	9	16	11	61	1.55
52167--52271	6	17.2	6	72	20	76	30	45	19	4	1.70
52167--52271	22	4.6	23	69	14	83	30	45	19	4	1.70
52166--52225	17	3.5	17	81	6	77	28	45	20	6	1.76
52218--52257	15	2.6	16	88	8	64	40	37	17	5	1.72
53718--53747	13	2.2	14	94	5	53	0	16	0	83	0.65
54451--54483	13	2.5	14	85	14	52	0	6	6	87	0.65
55012--55042	14	2.2	14	94	0	53	6	16	12	64	1.47
55305--55334	2	15.0	2	92	0	51	46	0	0	53	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56486--56510	12	2.1	12	100	0	50	24	0	36	40	1.55
58603--58640	2	19.0	2	94	0	67	50	2	0	47	1.15
58603--58646	12	3.7	12	93	0	61	50	4	2	43	1.35

Tables:   1

The End!