Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01016332.1 Corchorus capsularis cultivar CVL-1 contig16353, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33724

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
15--307
22
13.6
21
71
14
136
39
8
16
35
1.79
15--551
44
12.3
44
70
14
278
39
9
15
35
1.80
182--551
22
16.7
23
71
11
134
38
10
15
36
1.81
53--280
126
1.8
125
83
2
303
40
8
16
34
1.79
1276--1414
22
6.2
22
76
9
102
33
8
19
38
1.82
1450--1525
22
3.4
22
76
8
73
43
7
14
34
1.74
1589--1636
19
2.5
19
93
3
78
45
10
18
25
1.81
1589--2032
22
20.7
21
69
15
153
39
9
14
36
1.79
1627--1917
44
6.8
43
72
12
190
40
9
13
37
1.77
1622--1791
66
2.6
65
77
8
173
40
9
14
35
1.79
1796--1880
23
3.7
23
80
1
91
41
5
14
38
1.70
3460--3491
5
6.8
5
89
10
50
15
0
0
84
0.63
3460--3491
9
3.4
10
87
12
50
15
0
0
84
0.63
4137--4182
22
2.1
22
95
0
83
43
4
6
45
1.49
4137--4179
11
3.9
11
90
0
68
41
4
6
46
1.51
5880--5911
15
2.0
17
88
11
50
25
6
31
37
1.81
7820--7849
7
4.3
7
95
0
51
33
10
13
43
1.77
7820--7854
14
2.5
14
85
0
52
28
11
11
48
1.74
13616--13646
14
2.2
14
100
0
62
48
19
16
16
1.81
13630--13996
185
2.0
185
91
0
599
29
16
19
35
1.93
13977--14937
439
2.2
435
85
3
1291
26
13
17
42
1.86
14903--14967
30
2.2
30
94
0
112
29
12
7
50
1.67
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
18879--18905
4
6.8
4
100
0
54
22
0
0
77
0.76
26266--26302
18
2.1
18
94
0
65
48
13
18
18
1.80
32052--32105
28
1.9
28
85
7
74
24
12
20
42
1.87
32142--32253
33
3.7
29
75
14
93
31
8
18
41
1.82

Tables:   1

The End!