Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01016333.1 Corchorus capsularis cultivar CVL-1 contig16354, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  121359

Tables:   1   

This is table  1  of  1  ( 41 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
913--952
16
2.5
16
100
0
80
30
20
20
30
1.97
16524--16568
22
2.0
22
87
8
65
22
28
26
22
1.99
23200--23253
22
2.5
22
96
0
99
14
16
29
38
1.89
24047--24161
39
2.8
41
79
9
119
19
13
27
40
1.88
27334--27751
72
5.8
72
91
1
599
31
18
27
22
1.97
29057--29277
32
7.5
32
68
26
157
18
13
25
42
1.87
29019--29305
58
4.9
58
96
0
538
19
14
24
41
1.88
31249--31275
6
4.5
6
100
0
54
55
14
0
29
1.40
31272--31316
13
3.5
13
90
3
74
55
8
13
22
1.65
31272--31324
25
2.1
25
89
6
81
58
9
11
20
1.60
34978--35249
107
2.6
104
90
2
413
41
7
10
40
1.67
35959--35988
1
30.0
1
100
0
60
100
0
0
0
0.00
42731--42762
2
16.0
2
100
0
64
50
0
0
50
1.00
44296--44348
29
1.9
28
85
11
74
50
11
5
32
1.61
46607--46740
69
1.9
69
90
0
214
35
23
9
30
1.87
58125--58180
2
28.5
2
85
3
78
46
1
3
48
1.30
58908--59111
69
3.0
69
90
4
301
30
14
13
41
1.84
59090--59238
58
2.6
57
93
3
248
24
16
18
40
1.91
75593--75625
15
2.1
16
88
5
50
57
6
15
21
1.59
75980--76013
16
2.1
16
88
0
50
58
5
11
23
1.55
77967--78044
27
2.9
27
92
0
120
16
19
23
41
1.90
80697--80725
11
2.7
11
94
5
51
41
0
27
31
1.56
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
80871--81038
50
3.3
50
76
5
149
41
4
16
38
1.69
81795--81859
19
3.2
21
71
20
75
40
9
26
24
1.85
81778--81955
46
4.3
39
88
10
207
43
8
24
23
1.81
81845--81921
27
3.1
27
62
27
71
45
7
23
23
1.78
81817--82004
46
4.1
47
91
4
294
45
8
21
23
1.79
81767--82003
85
2.7
83
84
11
312
44
8
23
24
1.79
82008--82073
31
2.1
31
86
8
89
46
7
19
25
1.76
82212--82247
14
2.6
14
86
0
54
55
2
19
22
1.56
82186--82252
35
1.9
35
87
6
100
55
2
20
20
1.57
82259--82353
35
2.7
35
86
0
145
56
5
23
14
1.58
82448--82658
21
9.5
21
72
14
115
51
8
20
19
1.72
82524--82579
15
3.9
15
76
9
71
55
5
23
16
1.61
82520--82605
23
3.2
28
67
24
69
55
4
23
16
1.59
84082--84110
8
3.8
8
95
4
51
79
20
0
0
0.74
84081--84115
14
2.5
13
86
13
52
80
20
0
0
0.72
87871--87939
35
2.0
35
88
0
102
28
10
7
53
1.61
108351--108384
16
2.2
16
89
5
52
58
8
2
29
1.43
109652--109687
19
1.9
18
88
5
54
33
22
2
41
1.68
115400--115453
21
2.6
21
76
2
56
9
38
31
20
1.84

Tables:   1

The End!