Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01016335.1 Corchorus capsularis cultivar CVL-1 contig16356, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  124029

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3292--3329
11
3.5
11
89
10
51
39
0
2
57
1.12
7089--7127
16
2.6
14
84
15
51
2
15
2
79
0.95
14434--14464
15
2.1
15
100
0
62
51
6
12
29
1.65
23646--23674
13
2.1
14
93
6
51
31
10
44
13
1.78
26815--26866
26
2.0
26
100
0
104
65
19
11
3
1.40
33352--33418
33
2.1
32
85
2
89
53
13
2
29
1.54
41616--41651
19
1.9
18
88
5
54
33
22
2
41
1.68
42376--42467
30
3.1
29
73
10
87
27
29
16
27
1.97
44349--44473
37
3.4
37
76
6
101
20
35
16
28
1.93
46228--46284
21
2.7
21
94
0
96
52
12
21
14
1.73
61085--61129
13
3.5
13
90
3
74
22
13
8
55
1.65
61440--61520
39
2.1
38
86
6
110
30
12
6
50
1.64
61530--61606
36
2.1
36
83
9
104
25
12
5
55
1.58
68251--68295
13
3.5
13
90
3
74
22
13
8
55
1.65
75152--75178
6
4.5
6
100
0
54
0
0
14
85
0.61
81404--81446
21
2.0
21
95
0
77
18
4
20
55
1.60
81463--81505
21
2.0
21
100
0
86
18
4
18
58
1.56
81400--81514
59
1.9
59
98
0
221
20
8
20
50
1.74
86362--86442
24
3.2
24
67
21
67
19
11
24
44
1.83
87947--88095
60
2.5
60
78
7
169
38
15
14
30
1.88
101714--101746
6
5.7
6
92
7
59
36
15
0
48
1.45
102072--102117
22
2.1
22
87
0
65
32
10
19
36
1.87
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104531--104566
3
12.0
3
100
0
72
66
33
0
0
0.92
104797--104837
2
20.5
2
100
0
82
0
0
48
51
1.00
114763--114807
22
2.0
22
86
0
63
42
13
8
35
1.75
115709--115970
131
2.0
131
93
0
452
44
14
9
31
1.76
117166--117218
27
2.0
26
82
14
63
56
3
1
37
1.28
119485--119559
38
2.0
38
100
0
150
37
8
13
41
1.74
120588--120622
2
18.0
2
94
5
63
51
0
0
48
1.00

Tables:   1

The End!