Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01016338.1 Corchorus capsularis cultivar CVL-1 contig16359, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 12953
ACGTcount: A:0.31, C:0.17, G:0.20, T:0.32


Found at i:6424 original size:30 final size:30

Alignment explanation


    Indices: 6388--6450  Score: 101
    Period size: 30  Copynumber: 2.1  Consensus size: 30

       6378 TCTTCAAGAG

                       *                   
       6388 GGAGGGAATGATGCGCCCAAGG-CTTATCAT
          1 GGAGGGAATGAAGCG-CCAAGGACTTATCAT

                                          
       6418 GGAGGGAATGAAGCGCCAAGGACTTATCAT
          1 GGAGGGAATGAAGCGCCAAGGACTTATCAT

               
       6448 GGA
          1 GGA

       6451 CTTGAAGATG


Statistics
Matches: 31,  Mismatches: 1, Indels: 2
        0.91            0.03        0.06

Matches are distributed among these distances:
  29    6  0.19
  30   25  0.81

ACGTcount: A:0.30, C:0.17, G:0.35, T:0.17


Consensus pattern (30 bp):   
GGAGGGAATGAAGCGCCAAGGACTTATCAT
Done.