Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01016339.1 Corchorus capsularis cultivar CVL-1 contig16360, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2497
ACGTcount: A:0.30, C:0.17, G:0.21, T:0.31


Found at i:1750 original size:29 final size:29

Alignment explanation


    Indices: 1717--1782  Score: 82
    Period size: 29  Copynumber: 2.3  Consensus size: 29

       1707 TTTATAAAGA

                                           
       1717 GGGAAATAAG-TTT-AAAAGTGTTATACTTT
          1 GGGAAA-AAGTTTTCAAAA-TGTTATACTTT

                          *              
       1746 GGGAAAAAGTTTTCCAAATGTTATACTTT
          1 GGGAAAAAGTTTTCAAAATGTTATACTTT

              *     
       1775 GGTAAAAA
          1 GGGAAAAA

       1783 AATTGGCAAT


Statistics
Matches: 33,  Mismatches: 2, Indels: 4
        0.85            0.05        0.10

Matches are distributed among these distances:
  28    3  0.09
  29   27  0.82
  30    3  0.09

ACGTcount: A:0.39, C:0.06, G:0.20, T:0.35


Consensus pattern (29 bp):   
GGGAAAAAGTTTTCAAAATGTTATACTTT
Done.