Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01016343.1 Corchorus capsularis cultivar CVL-1 contig16364, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15876

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2324--2467
41
3.5
41
95
0
252
29
11
17
41
1.85
2323--2504
82
2.2
83
87
5
271
29
11
18
40
1.85
2341--2504
41
3.9
43
88
9
241
28
11
19
40
1.86
2591--2814
91
2.5
91
91
2
353
31
20
12
35
1.90
2857--2889
16
2.1
16
100
0
66
18
24
12
45
1.83
6308--6348
2
20.5
2
81
18
50
43
4
0
51
1.23
6294--6344
10
5.0
10
81
18
61
41
7
1
49
1.43
8244--8447
22
9.9
21
73
18
169
21
20
4
53
1.63
8322--8442
7
16.7
7
69
10
55
20
20
3
55
1.57
8322--8447
44
2.9
44
95
3
220
21
19
3
54
1.60
8336--8442
15
7.4
14
68
26
64
20
20
2
56
1.55
8460--8515
15
3.8
15
75
11
62
17
16
7
58
1.59
8462--8522
29
2.1
28
82
11
70
16
19
8
55
1.65
8520--8640
50
2.4
50
79
8
122
19
23
2
54
1.56
8572--8611
14
2.9
14
80
0
53
22
20
2
55
1.56
8738--8814
40
1.9
41
91
2
129
25
16
6
50
1.69
9563--9698
51
2.6
50
82
5
173
40
15
5
38
1.69
12252--12293
13
3.2
13
86
10
50
11
4
2
80
0.95
12252--12293
14
3.1
14
86
3
50
11
4
2
80
0.95
12722--12806
27
3.0
28
82
5
109
44
22
14
18
1.85
15452--15487
19
1.9
18
88
5
54
41
2
22
33
1.68

Tables:   1

The End!