Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01016345.1 Corchorus capsularis cultivar CVL-1 contig16366, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6092
ACGTcount: A:0.27, C:0.15, G:0.22, T:0.36


Found at i:3835 original size:19 final size:19

Alignment explanation


    Indices: 3808--3856  Score: 62
    Period size: 19  Copynumber: 2.6  Consensus size: 19

       3798 TAATTAATTG

                               
       3808 TTTAAATATTAAATTTTTA
          1 TTTAAATATTAAATTTTTA

                *      *       
       3827 TTTATATATTATATTTTTA
          1 TTTAAATATTAAATTTTTA

            *     *    
       3846 CTTAAAAATTA
          1 TTTAAATATTA

       3857 CTCATAATCA


Statistics
Matches: 25,  Mismatches: 5, Indels: 0
        0.83            0.17        0.00

Matches are distributed among these distances:
  19   25  1.00

ACGTcount: A:0.41, C:0.02, G:0.00, T:0.57


Consensus pattern (19 bp):   
TTTAAATATTAAATTTTTA
Done.