Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01016346.1 Corchorus capsularis cultivar CVL-1 contig16367, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1967
ACGTcount: A:0.30, C:0.17, G:0.21, T:0.32


Found at i:820 original size:21 final size:21

Alignment explanation


    Indices: 796--844  Score: 64
    Period size: 21  Copynumber: 2.3  Consensus size: 21

        786 GCAATGTAGT

                                  
        796 ACATGGGTCG-AAAGGCAAACC
          1 ACATGGGTCGCAAA-GCAAACC

                       *     *   
        817 ACATGGGTCGCCAAGCATACC
          1 ACATGGGTCGCAAAGCAAACC

                   
        838 ACATGGG
          1 ACATGGG

        845 CCCCCAGCGC


Statistics
Matches: 25,  Mismatches: 2, Indels: 2
        0.86            0.07        0.07

Matches are distributed among these distances:
  21   23  0.92
  22    2  0.08

ACGTcount: A:0.33, C:0.27, G:0.29, T:0.12


Consensus pattern (21 bp):   
ACATGGGTCGCAAAGCAAACC
Done.