Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01016347.1 Corchorus capsularis cultivar CVL-1 contig16368, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22599

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
383--427
22
2.0
23
86
4
65
20
24
6
48
1.73
1731--1775
22
2.0
23
86
4
65
20
24
6
48
1.73
5012--5053
2
21.0
2
95
0
66
50
4
0
45
1.23
9829--9896
17
4.1
17
79
11
77
11
26
4
57
1.53
9830--9898
16
4.2
16
77
14
68
11
27
4
56
1.53
10166--10328
33
4.9
33
94
0
290
30
19
20
29
1.97
10333--10393
29
2.1
29
87
6
88
29
16
16
37
1.91
10413--10515
54
1.9
54
89
0
161
33
22
11
33
1.90
11785--11882
35
2.8
35
92
0
160
34
16
24
24
1.95
12125--12282
83
1.9
82
89
1
244
29
15
16
38
1.90
15626--15693
17
4.1
17
79
11
77
11
26
4
57
1.53
15627--15695
16
4.2
16
77
14
68
11
27
4
56
1.53
17496--17539
21
2.2
20
87
4
61
34
6
2
56
1.38
18818--18844
2
13.5
2
100
0
54
48
0
0
51
1.00
18922--18951
2
15.0
2
100
0
60
50
0
0
50
1.00
20676--20702
2
13.5
2
100
0
54
48
0
0
51
1.00
21829--21883
12
4.5
12
93
4
92
34
14
23
27
1.94
21829--21883
25
2.2
24
93
3
92
34
14
23
27
1.94

Tables:   1

The End!