Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWWV01016351.1 Corchorus capsularis cultivar CVL-1 contig16372, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 7801
ACGTcount: A:0.32, C:0.16, G:0.22, T:0.30
Found at i:132 original size:33 final size:33
Alignment explanation
Indices: 90--154 Score: 112
Period size: 33 Copynumber: 2.0 Consensus size: 33
80 CCAGCCATGC
*
90 GACTTGGAGAAGCCCGGCCAACACCGGCCACGT
1 GACTCGGAGAAGCCCGGCCAACACCGGCCACGT
*
123 GACTCGGAGATGCCCGGCCAACACCGGCCACG
1 GACTCGGAGAAGCCCGGCCAACACCGGCCACG
155 CGACATGGAC
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.23, C:0.38, G:0.31, T:0.08
Consensus pattern (33 bp):
GACTCGGAGAAGCCCGGCCAACACCGGCCACGT
Found at i:173 original size:33 final size:33
Alignment explanation
Indices: 83--185 Score: 111
Period size: 33 Copynumber: 3.1 Consensus size: 33
73 CTAGTGACCA
* * * *
83 GCCATGCGACTTGGAGAAGCCCGGCCAACACCG
1 GCCACGCGACTCGGACATGCCCGGCCAACACCG
* *
116 GCCACGTGACTCGGAGATGCCCGGCCAACACCG
1 GCCACGCGACTCGGACATGCCCGGCCAACACCG
*
149 GCCACGCGACAT-GGACATGTCCGGCC-ACAACCG
1 GCCACGCGAC-TCGGACATGCCCGGCCAAC-ACCG
182 GCCA
1 GCCA
186 TCGCTTAGCG
Statistics
Matches: 61, Mismatches: 7, Indels: 4
0.85 0.10 0.06
Matches are distributed among these distances:
32 2 0.03
33 58 0.95
34 1 0.02
ACGTcount: A:0.23, C:0.39, G:0.29, T:0.09
Consensus pattern (33 bp):
GCCACGCGACTCGGACATGCCCGGCCAACACCG
Found at i:1335 original size:154 final size:154
Alignment explanation
Indices: 771--2392 Score: 2625
Period size: 154 Copynumber: 10.6 Consensus size: 154
761 TCGATTTCTT
*
771 AAAATAATTATAGTTAGGCCAGAAATAATGGAAAGAAAAGCTTTGTGGTTTGCCAAATCGAAGAC
1 AAAATAATTATAGTTAGGCCAGAAACAATGGAAAGAAAAGCTTTGTGGTTTGCCAAATCGAAGAC
836 GATTCAAAACAGCACTAATGGGCCCCGAAAGGCCCGAAATAACAAGTGTTCTGAATGAGCTAAAA
66 GATTCAAAACAGCACTAATGGGCCCCGAAAGGCCCGAAATAACAAGTGTTCTGAATGAGCTAAAA
*
901 ACTTCACAATGGACTAATCTCGTAC
131 ACTTCACAATGGACTAATCTCAT-C
* *
926 AAAATAATTATAGTTAAGCTAGAAACAATGGAAAG-AAAGCTTTGTGGTTTGCCAAATCGAAGAC
1 AAAATAATTATAGTTAGGCCAGAAACAATGGAAAGAAAAGCTTTGTGGTTTGCCAAATCGAAGAC
990 GATTCAAAACAGCACTAATGGGCCCC-AAAGGCCCGAAATAACAAGTGTTCTGAATGAGCTAAAA
66 GATTCAAAACAGCACTAATGGGCCCCGAAAGGCCCGAAATAACAAGTGTTCTGAATGAGCTAAAA
*
1054 ACTTCACAATGGACTAATCTCGTC
131 ACTTCACAATGGACTAATCTCATC
*
1078 AAAATAATTATAGTTAAGCCAGAAAC-ATGGAAAGAAAAGCTTTGTGGTTTGCCAAATCGAAGAC
1 AAAATAATTATAGTTAGGCCAGAAACAATGGAAAGAAAAGCTTTGTGGTTTGCCAAATCGAAGAC
* * *
1142 GATTCAAAACAGCCCTAATGGGCCCCGAAAGGCCTGAAATTAA-AAGTGTTCTGAATGAGTTAAA
66 GATTCAAAACAGCACTAATGGGCCCCGAAAGGCCCGAAA-TAACAAGTGTTCTGAATGAGCTAAA
1206 AACTTCACAATGGACTAATCTCATC
130 AACTTCACAATGGACTAATCTCATC
* * * * * *
1231 ACAATAATTATAGTTAGGGCATAAACAAAGGAAAGATAAGCTTTGTGGTTTGCTAAATCGAAGAC
1 AAAATAATTATAGTTAGGCCAGAAACAATGGAAAGAAAAGCTTTGTGGTTTGCCAAATCGAAGAC
**
1296 GATTCAAAACAGCACTAATGGGCCAAGAAAGGCCCGAAATAACAAGTGTTCTGAATGAGCTAAAA
66 GATTCAAAACAGCACTAATGGGCCCCGAAAGGCCCGAAATAACAAGTGTTCTGAATGAGCTAAAA
1361 ACTTCACAATGGACTAATCTCATC
131 ACTTCACAATGGACTAATCTCATC
* * * *
1385 AAAATAATTATAGTTAGGCCATAAACAAAGGAAAGATAAGCTTAT-TGGTTTGCCAAATCGAAGT
1 AAAATAATTATAGTTAGGCCAGAAACAATGGAAAGAAAAGCTT-TGTGGTTTGCCAAATCGAAGA
1449 CGATTCAAAACAGCACTAATGGGCCCCGAAAGGCCCGAAATAACAAGTGTTCTGAATGAGCTAAA
65 CGATTCAAAACAGCACTAATGGGCCCCGAAAGGCCCGAAATAACAAGTGTTCTGAATGAGCTAAA
1514 AACTTCACAATGGACTAATCTCATC
130 AACTTCACAATGGACTAATCTCATC
*
1539 AAAATAATTATAGTTAGGCCAGGACACAATGGAAAGAAAAGCTTTGTGGTTTGCCAAATCGAAGA
1 AAAATAATTATAGTTAGGCCA-GAAACAATGGAAAGAAAAGCTTTGTGGTTTGCCAAATCGAAGA
* * *
1604 CGATTCAAAACAGCACTAATGGGCCCCAAAAGACCCGAAATAACAAGTGTTCTGAATGTGCTAAA
65 CGATTCAAAACAGCACTAATGGGCCCCGAAAGGCCCGAAATAACAAGTGTTCTGAATGAGCTAAA
*
1669 AACTTCACAATGGACTAATCTCACC
130 AACTTCACAATGGACTAATCTCATC
* * * * *
1694 AAAATGATTATAGCTAGGTC-GTAAACAATTGAAAGAAAAGCTTTGTTGG-TTG-CAAATTGAAG
1 AAAATAATTATAGTTAGGCCAG-AAACAATGGAAAGAAAAGCTTTG-TGGTTTGCCAAATCGAAG
* * * * * *
1756 CCGATTTAAAACAGCAATAATGGGCCTCGAAAGGCCCGAACTAACAAGTGTTCTG-ATGAGTTAA
64 ACGATTCAAAACAGCACTAATGGGCCCCGAAAGGCCCGAAATAACAAGTGTTCTGAATGAGCTAA
1820 AAACTTCACAATGGACTAATCTCATC
129 AAACTTCACAATGGACTAATCTCATC
1846 AAAATAATTATAGTTAGGCCAGAAACAATGGAAAGAAAAGCTTTGTGGTTTGCCAAATCGAAGAC
1 AAAATAATTATAGTTAGGCCAGAAACAATGGAAAGAAAAGCTTTGTGGTTTGCCAAATCGAAGAC
*
1911 GATTCAAAACAGCACTAATGGGCCTCGAAAGGCCCGAAATAACAAGTGTTCTGAATGAGCTAAAA
66 GATTCAAAACAGCACTAATGGGCCCCGAAAGGCCCGAAATAACAAGTGTTCTGAATGAGCTAAAA
1976 ACTTCACAATGGACTAATCTCATC
131 ACTTCACAATGGACTAATCTCATC
*
2000 AAAATAATTATAGTTAGGCCAGAAACAATGCAAAGAAAAGCTTTGTGGTTTGCCAAATCGAAGAC
1 AAAATAATTATAGTTAGGCCAGAAACAATGGAAAGAAAAGCTTTGTGGTTTGCCAAATCGAAGAC
* * * *
2065 GATTCAAAACAGCACTAATGGGTCCCGAATGGCCCGAAATAAAAAGTGTTCTGAATGAGTTAAAA
66 GATTCAAAACAGCACTAATGGGCCCCGAAAGGCCCGAAATAACAAGTGTTCTGAATGAGCTAAAA
2130 ACTTCACAATGGACTAATCTCATC
131 ACTTCACAATGGACTAATCTCATC
* * * *
2154 AAAATAATTATAGTTAGGGCATAAACAAAGGAAAGATAAGCTTTGTGGTTTGCCAAATCGAAGAC
1 AAAATAATTATAGTTAGGCCAGAAACAATGGAAAGAAAAGCTTTGTGGTTTGCCAAATCGAAGAC
**
2219 GATTCAAAACAGCACTAATGGGCCAAGAAAGGCCCGAAATAA-AAGTGTTCTGAATGAGCTAAAA
66 GATTCAAAACAGCACTAATGGGCCCCGAAAGGCCCGAAATAACAAGTGTTCTGAATGAGCTAAAA
2283 ACTTCACAATGGACTAATCTCATC
131 ACTTCACAATGGACTAATCTCATC
* * * * *
2307 AAAATAATTATAGTTAGGCCATAAACAAAGGAAAGATAAGTTTTGTGGTCTGCCAAATCGAAGAC
1 AAAATAATTATAGTTAGGCCAGAAACAATGGAAAGAAAAGCTTTGTGGTTTGCCAAATCGAAGAC
*
2372 GATTCAAAACAGTACTAATGG
66 GATTCAAAACAGCACTAATGG
2393 TGTGTACCAT
Statistics
Matches: 1372, Mismatches: 81, Indels: 30
0.93 0.05 0.02
Matches are distributed among these distances:
151 11 0.01
152 154 0.11
153 387 0.28
154 645 0.47
155 175 0.13
ACGTcount: A:0.40, C:0.18, G:0.19, T:0.23
Consensus pattern (154 bp):
AAAATAATTATAGTTAGGCCAGAAACAATGGAAAGAAAAGCTTTGTGGTTTGCCAAATCGAAGAC
GATTCAAAACAGCACTAATGGGCCCCGAAAGGCCCGAAATAACAAGTGTTCTGAATGAGCTAAAA
ACTTCACAATGGACTAATCTCATC
Found at i:1866 original size:461 final size:461
Alignment explanation
Indices: 771--2392 Score: 2675
Period size: 461 Copynumber: 3.5 Consensus size: 461
761 TCGATTTCTT
* * * *
771 AAAATAATTATAGTTAGGCCAGAAATAATGGAAAGAAAAGCTTTGTGGTTTGCCAAATCGAAGAC
1 AAAATAATTATAGTTAGGGCATAAACAAAGGAAAGAAAAGCTTTGTGGTTTGCCAAATCGAAGAC
**
836 GATTCAAAACAGCACTAATGGGCCCCGAAAGGCCCGAAATAACAAGTGTTCTGAATGAGCTAAAA
66 GATTCAAAACAGCACTAATGGGCCAAGAAAGGCCCGAAATAACAAGTGTTCTGAATGAGCTAAAA
* * * *
901 ACTTCACAATGGACTAATCTCGTACAAAATAATTATAGTTAAGCTAGAAACAATGGAAAGA-AAG
131 ACTTCACAATGGACTAATCTCAT-CAAAATAATTATAGTTAGGCCAGAAACAAAGGAAAGATAAG
965 CTTTGTGGTTTGCCAAATCGAAGACGATTCAAAACAGCACTAATGGGCCCC-AAAGGCCCGAAAT
195 CTTTGTGGTTTGCCAAATCGAAGACGATTCAAAACAGCACTAATGGGCCCCGAAAGGCCCGAAAT
*
1029 AACAAGTGTTCTGAATGAGCTAAAAACTTCACAATGGACTAATCTCGTCAAAATAATTATAGTTA
260 AACAAGTGTTCTGAATGAGCTAAAAACTTCACAATGGACTAATCTCATCAAAATAATTATAGTTA
* *
1094 AGCCAGAAAC-ATGGAAAGAAAAGCTTTGTGGTTTGCCAAATCGAAGACGATTCAAAACAGCCCT
325 GGCCAGAAACAATGGAAAGAAAAGCTTTGTGGTTTGCCAAATCGAAGACGATTCAAAACAGCACT
*
1158 AATGGGCCCCGAAAGGCCTGAAATTAAAAGTGTTCTGAATGAGTTAAAAACTTCACAATGGACTA
390 AATGGGCCCCGAAAGGCCCGAAA-TAAAAGTGTTCTGAATGAGTTAAAAACTTCACAATGGACTA
1223 ATCTCATC
454 ATCTCATC
* * *
1231 ACAATAATTATAGTTAGGGCATAAACAAAGGAAAGATAAGCTTTGTGGTTTGCTAAATCGAAGAC
1 AAAATAATTATAGTTAGGGCATAAACAAAGGAAAGAAAAGCTTTGTGGTTTGCCAAATCGAAGAC
1296 GATTCAAAACAGCACTAATGGGCCAAGAAAGGCCCGAAATAACAAGTGTTCTGAATGAGCTAAAA
66 GATTCAAAACAGCACTAATGGGCCAAGAAAGGCCCGAAATAACAAGTGTTCTGAATGAGCTAAAA
*
1361 ACTTCACAATGGACTAATCTCATCAAAATAATTATAGTTAGGCCATAAACAAAGGAAAGATAAGC
131 ACTTCACAATGGACTAATCTCATCAAAATAATTATAGTTAGGCCAGAAACAAAGGAAAGATAAGC
*
1426 TTAT-TGGTTTGCCAAATCGAAGTCGATTCAAAACAGCACTAATGGGCCCCGAAAGGCCCGAAAT
196 TT-TGTGGTTTGCCAAATCGAAGACGATTCAAAACAGCACTAATGGGCCCCGAAAGGCCCGAAAT
1490 AACAAGTGTTCTGAATGAGCTAAAAACTTCACAATGGACTAATCTCATCAAAATAATTATAGTTA
260 AACAAGTGTTCTGAATGAGCTAAAAACTTCACAATGGACTAATCTCATCAAAATAATTATAGTTA
*
1555 GGCCAGGACACAATGGAAAGAAAAGCTTTGTGGTTTGCCAAATCGAAGACGATTCAAAACAGCAC
325 GGCCA-GAAACAATGGAAAGAAAAGCTTTGTGGTTTGCCAAATCGAAGACGATTCAAAACAGCAC
* * * *
1620 TAATGGGCCCCAAAAGACCCGAAATAACAAGTGTTCTGAATGTGCTAAAAACTTCACAATGGACT
389 TAATGGGCCCCGAAAGGCCCGAAATAA-AAGTGTTCTGAATGAGTTAAAAACTTCACAATGGACT
*
1685 AATCTCACC
453 AATCTCATC
* * * * ** * *
1694 AAAATGATTATAGCTAGGTCGTAAACAATTGAAAGAAAAGCTTTGTTGG-TTG-CAAATTGAAGC
1 AAAATAATTATAGTTAGGGCATAAACAAAGGAAAGAAAAGCTTTG-TGGTTTGCCAAATCGAAGA
* * ** * *
1757 CGATTTAAAACAGCAATAATGGGCCTCGAAAGGCCCGAACTAACAAGTGTTCTG-ATGAGTTAAA
65 CGATTCAAAACAGCACTAATGGGCCAAGAAAGGCCCGAAATAACAAGTGTTCTGAATGAGCTAAA
* *
1821 AACTTCACAATGGACTAATCTCATCAAAATAATTATAGTTAGGCCAGAAACAATGGAAAGAAAAG
130 AACTTCACAATGGACTAATCTCATCAAAATAATTATAGTTAGGCCAGAAACAAAGGAAAGATAAG
*
1886 CTTTGTGGTTTGCCAAATCGAAGACGATTCAAAACAGCACTAATGGGCCTCGAAAGGCCCGAAAT
195 CTTTGTGGTTTGCCAAATCGAAGACGATTCAAAACAGCACTAATGGGCCCCGAAAGGCCCGAAAT
1951 AACAAGTGTTCTGAATGAGCTAAAAACTTCACAATGGACTAATCTCATCAAAATAATTATAGTTA
260 AACAAGTGTTCTGAATGAGCTAAAAACTTCACAATGGACTAATCTCATCAAAATAATTATAGTTA
*
2016 GGCCAGAAACAATGCAAAGAAAAGCTTTGTGGTTTGCCAAATCGAAGACGATTCAAAACAGCACT
325 GGCCAGAAACAATGGAAAGAAAAGCTTTGTGGTTTGCCAAATCGAAGACGATTCAAAACAGCACT
* *
2081 AATGGGTCCCGAATGGCCCGAAATAAAAAGTGTTCTGAATGAGTTAAAAACTTCACAATGGACTA
390 AATGGGCCCCGAAAGGCCCGAAAT-AAAAGTGTTCTGAATGAGTTAAAAACTTCACAATGGACTA
2146 ATCTCATC
454 ATCTCATC
*
2154 AAAATAATTATAGTTAGGGCATAAACAAAGGAAAGATAAGCTTTGTGGTTTGCCAAATCGAAGAC
1 AAAATAATTATAGTTAGGGCATAAACAAAGGAAAGAAAAGCTTTGTGGTTTGCCAAATCGAAGAC
2219 GATTCAAAACAGCACTAATGGGCCAAGAAAGGCCCGAAATAA-AAGTGTTCTGAATGAGCTAAAA
66 GATTCAAAACAGCACTAATGGGCCAAGAAAGGCCCGAAATAACAAGTGTTCTGAATGAGCTAAAA
* *
2283 ACTTCACAATGGACTAATCTCATCAAAATAATTATAGTTAGGCCATAAACAAAGGAAAGATAAGT
131 ACTTCACAATGGACTAATCTCATCAAAATAATTATAGTTAGGCCAGAAACAAAGGAAAGATAAGC
* *
2348 TTTGTGGTCTGCCAAATCGAAGACGATTCAAAACAGTACTAATGG
196 TTTGTGGTTTGCCAAATCGAAGACGATTCAAAACAGCACTAATGG
2393 TGTGTACCAT
Statistics
Matches: 1073, Mismatches: 77, Indels: 23
0.91 0.07 0.02
Matches are distributed among these distances:
459 36 0.03
460 367 0.34
461 447 0.42
462 64 0.06
463 156 0.15
464 3 0.00
ACGTcount: A:0.40, C:0.18, G:0.19, T:0.23
Consensus pattern (461 bp):
AAAATAATTATAGTTAGGGCATAAACAAAGGAAAGAAAAGCTTTGTGGTTTGCCAAATCGAAGAC
GATTCAAAACAGCACTAATGGGCCAAGAAAGGCCCGAAATAACAAGTGTTCTGAATGAGCTAAAA
ACTTCACAATGGACTAATCTCATCAAAATAATTATAGTTAGGCCAGAAACAAAGGAAAGATAAGC
TTTGTGGTTTGCCAAATCGAAGACGATTCAAAACAGCACTAATGGGCCCCGAAAGGCCCGAAATA
ACAAGTGTTCTGAATGAGCTAAAAACTTCACAATGGACTAATCTCATCAAAATAATTATAGTTAG
GCCAGAAACAATGGAAAGAAAAGCTTTGTGGTTTGCCAAATCGAAGACGATTCAAAACAGCACTA
ATGGGCCCCGAAAGGCCCGAAATAAAAGTGTTCTGAATGAGTTAAAAACTTCACAATGGACTAAT
CTCATC
Found at i:2251 original size:769 final size:766
Alignment explanation
Indices: 771--2392 Score: 2684
Period size: 769 Copynumber: 2.1 Consensus size: 766
761 TCGATTTCTT
*
771 AAAATAATTATAGTTAGGCCAGAAATAATGGAAAGAAAAGCTTTGTGGTTTGCCAAATCGAAGAC
1 AAAATAATTATAGTTAGGCCAGAAACAATGGAAAGAAAAGCTTTGTGGTTTGCCAAATCGAAGAC
* *
836 GATTCAAAACAGCACTAATGGGCCCCGAAAGGCCCGAAATAACAAGTGTTCTGAATGAGCTAAAA
66 GATTCAAAACAGCACTAATGGGCCCCAAAAGACCCGAAATAACAAGTGTTCTGAATGAGCTAAAA
*
901 ACTTCACAATGGACTAATCTCGTACAAAATAATTATAGTTAAGCTAGAAACAATGGAAAGAAAGC
131 ACTTCACAATGGACTAATCTCG-ACAAAATAATTATAGCTAAGCTAGAAACAATGGAAAGAAAGC
*
966 TTTGTGGTTTGCCAAATCGAAGACGATTCAAAACAGCACTAATGGGCCCCAAAGGCCCGAAATAA
195 TTTGTGGTTTGCCAAATCGAAGACGATTCAAAACAGCAATAATGGGCCCCAAAGGCCCGAAATAA
*
1031 CAAGTGTTCTGAATGAGCTAAAAACTTCACAATGGACTAATCTCGTCAAAATAATTATAGTTAAG
260 CAAGTGTTCTGAATGAGCTAAAAACTTCACAATGGACTAATCTCATCAAAATAATTATAGTTAAG
*
1096 CCAGAAACATGGAAAGAAAAGCTTTGTGGTTTGCCAAATCGAAGACGATTCAAAACAGCCCTAAT
325 CCAGAAACATGGAAAGAAAAGCTTTGTGGTTTGCCAAATCGAAGACGATTCAAAACAGCACTAAT
* *
1161 GGGCCCCGAAAGGCCTGAAATTAAAAGTGTTCTGAATGAGTTAAAAACTTCACAATGGACTAATC
390 GGGCCCCGAAAGGCCCGAAATTAAAAGTGTTCTGAATGAGCTAAAAACTTCACAATGGACTAATC
* * * * * *
1226 TCATCACAATAATTATAGTTAGGGCATAAACAAAGGAAAGATAAGCTTTGTGGTTTGCTAAATCG
455 TCATCAAAATAATTATAGTTAGGCCAGAAACAAAGCAAAGAAAAGCTTTGTGGTTTGCCAAATCG
*
1291 AAGACGATTCAAAACAGCACTAATGGGCCAAGAAAGGCCCGAAATAACAAGTGTTCTGAATGAGC
520 AAGACGATTCAAAACAGCACTAATGGGCCAAGAAAGGCCCGAAATAAAAAGTGTTCTGAATGAGC
1356 TAAAAACTTCACAATGGACTAATCTCATCAAAATAATTATAGTTAGGCCATAAACAAAGGAAAGA
585 TAAAAACTTCACAATGGACTAATCTCATCAAAATAATTATAGTTAGGCCATAAACAAAGGAAAGA
* **
1421 TAAGCTTATTGGTTTGCCAAATCGAAGTCGATTCAAAACAGCACTAATGGGCCCCGAAAGGCCCG
650 TAAGCTTATTGGTTTGCCAAATCGAAGACGATTCAAAACAGCACTAATGGGCCAAGAAAGGCCCG
1486 AAATAACAAGTGTTCTGAATGAGCTAAAAACTTCACAATGGACTAATCTCATC
715 AAATAA-AAGTGTTCTGAATGAGCTAAAAACTTCACAATGGACTAATCTCATC
*
1539 AAAATAATTATAGTTAGGCCAGGACACAATGGAAAGAAAAGCTTTGTGGTTTGCCAAATCGAAGA
1 AAAATAATTATAGTTAGGCCA-GAAACAATGGAAAGAAAAGCTTTGTGGTTTGCCAAATCGAAGA
*
1604 CGATTCAAAACAGCACTAATGGGCCCCAAAAGACCCGAAATAACAAGTGTTCTGAATGTGCTAAA
65 CGATTCAAAACAGCACTAATGGGCCCCAAAAGACCCGAAATAACAAGTGTTCTGAATGAGCTAAA
* * * *
1669 AACTTCACAATGGACTAATCTC-ACCAAAATGATTATAGCT-AGGTCGTAAACAATTGAAAGAAA
130 AACTTCACAATGGACTAATCTCGA-CAAAATAATTATAGCTAAGCTAG-AAACAATGGAAAG-AA
* * * *
1732 AGCTTTGTTGG-TTG-CAAATTGAAGCCGATTTAAAACAGCAATAATGGGCCTCGAAAGGCCCGA
192 AGCTTTG-TGGTTTGCCAAATCGAAGACGATTCAAAACAGCAATAATGGGCC-CCAAAGGCCCGA
* *
1795 ACTAACAAGTGTTCTG-ATGAGTTAAAAACTTCACAATGGACTAATCTCATCAAAATAATTATAG
255 AATAACAAGTGTTCTGAATGAGCTAAAAACTTCACAATGGACTAATCTCATCAAAATAATTATAG
*
1859 TTAGGCCAGAAACAATGGAAAGAAAAGCTTTGTGGTTTGCCAAATCGAAGACGATTCAAAACAGC
320 TTAAGCCAGAAAC-ATGGAAAGAAAAGCTTTGTGGTTTGCCAAATCGAAGACGATTCAAAACAGC
*
1924 ACTAATGGGCCTCGAAAGGCCCGAAA-TAACAAGTGTTCTGAATGAGCTAAAAACTTCACAATGG
384 ACTAATGGGCCCCGAAAGGCCCGAAATTAA-AAGTGTTCTGAATGAGCTAAAAACTTCACAATGG
*
1988 ACTAATCTCATCAAAATAATTATAGTTAGGCCAGAAACAATGCAAAGAAAAGCTTTGTGGTTTGC
448 ACTAATCTCATCAAAATAATTATAGTTAGGCCAGAAACAAAGCAAAGAAAAGCTTTGTGGTTTGC
* *
2053 CAAATCGAAGACGATTCAAAACAGCACTAATGGGTCC-CGAATGGCCCGAAATAAAAAGTGTTCT
513 CAAATCGAAGACGATTCAAAACAGCACTAATGGG-CCAAGAAAGGCCCGAAATAAAAAGTGTTCT
* *
2117 GAATGAGTTAAAAACTTCACAATGGACTAATCTCATCAAAATAATTATAGTTAGGGCATAAACAA
577 GAATGAGCTAAAAACTTCACAATGGACTAATCTCATCAAAATAATTATAGTTAGGCCATAAACAA
2182 AGGAAAGATAAGCTT-TGTGGTTTGCCAAATCGAAGACGATTCAAAACAGCACTAATGGGCCAAG
642 AGGAAAGATAAGCTTAT-TGGTTTGCCAAATCGAAGACGATTCAAAACAGCACTAATGGGCCAAG
2246 AAAGGCCCGAAATAAAAGTGTTCTGAATGAGCTAAAAACTTCACAATGGACTAATCTCATC
706 AAAGGCCCGAAATAAAAGTGTTCTGAATGAGCTAAAAACTTCACAATGGACTAATCTCATC
* * * * *
2307 AAAATAATTATAGTTAGGCCATAAACAAAGGAAAGATAAGTTTTGTGGTCTGCCAAATCGAAGAC
1 AAAATAATTATAGTTAGGCCAGAAACAATGGAAAGAAAAGCTTTGTGGTTTGCCAAATCGAAGAC
*
2372 GATTCAAAACAGTACTAATGG
66 GATTCAAAACAGCACTAATGG
2393 TGTGTACCAT
Statistics
Matches: 799, Mismatches: 45, Indels: 21
0.92 0.05 0.02
Matches are distributed among these distances:
767 63 0.08
768 208 0.26
769 523 0.65
770 5 0.01
ACGTcount: A:0.40, C:0.18, G:0.19, T:0.23
Consensus pattern (766 bp):
AAAATAATTATAGTTAGGCCAGAAACAATGGAAAGAAAAGCTTTGTGGTTTGCCAAATCGAAGAC
GATTCAAAACAGCACTAATGGGCCCCAAAAGACCCGAAATAACAAGTGTTCTGAATGAGCTAAAA
ACTTCACAATGGACTAATCTCGACAAAATAATTATAGCTAAGCTAGAAACAATGGAAAGAAAGCT
TTGTGGTTTGCCAAATCGAAGACGATTCAAAACAGCAATAATGGGCCCCAAAGGCCCGAAATAAC
AAGTGTTCTGAATGAGCTAAAAACTTCACAATGGACTAATCTCATCAAAATAATTATAGTTAAGC
CAGAAACATGGAAAGAAAAGCTTTGTGGTTTGCCAAATCGAAGACGATTCAAAACAGCACTAATG
GGCCCCGAAAGGCCCGAAATTAAAAGTGTTCTGAATGAGCTAAAAACTTCACAATGGACTAATCT
CATCAAAATAATTATAGTTAGGCCAGAAACAAAGCAAAGAAAAGCTTTGTGGTTTGCCAAATCGA
AGACGATTCAAAACAGCACTAATGGGCCAAGAAAGGCCCGAAATAAAAAGTGTTCTGAATGAGCT
AAAAACTTCACAATGGACTAATCTCATCAAAATAATTATAGTTAGGCCATAAACAAAGGAAAGAT
AAGCTTATTGGTTTGCCAAATCGAAGACGATTCAAAACAGCACTAATGGGCCAAGAAAGGCCCGA
AATAAAAGTGTTCTGAATGAGCTAAAAACTTCACAATGGACTAATCTCATC
Done.