genome.fa.s16352.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01016352.1 Corchorus capsularis cultivar CVL-1 contig16373, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  12029

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3363--3425	33	1.9	33	90	6	101	9	25	42	22	1.83
3371--3507	33	4.2	32	85	7	141	8	28	41	21	1.82
3618--4699	159	6.8	159	89	1	1603	25	22	23	28	2.00
8520--8545	13	2.0	13	100	0	52	15	23	7	53	1.67
8734--8758	3	8.3	3	100	0	50	32	0	0	68	0.90
9133--9192	20	3.0	20	82	2	75	51	3	23	21	1.62
9137--9196	21	2.9	21	82	2	77	53	3	21	21	1.60
9170--9710	36	15.2	36	77	13	523	52	4	22	19	1.64
9256--9506	29	8.2	29	72	15	102	52	3	23	20	1.61
9167--9318	7	21.1	7	70	7	54	55	5	20	18	1.61
9287--9376	45	2.0	46	85	10	123	52	6	17	23	1.68
9179--9613	153	3.0	153	83	10	464	53	4	22	19	1.64
9361--9638	7	38.9	7	68	16	133	53	3	24	18	1.61
9332--9710	136	2.8	136	90	3	577	52	4	23	19	1.63
9691--10064	28	13.9	27	72	19	178	56	3	20	20	1.56
9717--9819	49	2.1	49	89	3	154	52	3	20	23	1.63
9751--9789	20	2.0	20	90	5	62	46	5	20	28	1.72
9763--9944	28	6.7	28	85	9	204	53	3	19	22	1.61
9691--9976	76	3.6	75	76	17	228	55	3	19	20	1.59
9949--10010	18	3.5	17	72	12	54	62	1	20	14	1.39
9948--10016	17	3.9	18	72	12	63	62	1	21	14	1.40
9984--10059	25	2.9	25	81	13	82	59	1	21	18	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10281--10364	42	2.0	42	85	0	114	23	42	26	7	1.80
11820--11853	8	4.1	8	85	7	50	58	14	2	23	1.50

Tables:   1

The End!