Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01016353.1 Corchorus capsularis cultivar CVL-1 contig16374, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  13784

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
374--430
30
1.9
30
85
7
80
35
15
29
19
1.93
1466--1499
8
4.1
8
85
7
50
58
14
2
23
1.50
2327--2385
30
2.0
30
86
6
84
35
15
30
18
1.92
3978--4003
11
2.4
11
100
0
52
84
0
0
15
0.62
6670--6767
33
3.0
33
85
5
110
8
26
43
21
1.80
6704--6800
33
2.9
32
80
6
95
10
29
40
19
1.85
6788--6827
21
1.9
21
94
0
71
17
35
25
22
1.95
11321--11354
8
4.1
8
85
7
50
23
2
14
58
1.50
12132--12223
33
2.8
33
85
6
116
10
25
43
20
1.84
12136--12242
33
3.2
32
81
5
106
10
27
43
18
1.82
12212--12263
21
2.4
22
87
6
79
15
32
34
17
1.91

Tables:   1

The End!