Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01016354.1 Corchorus capsularis cultivar CVL-1 contig16375, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3373
ACGTcount: A:0.31, C:0.15, G:0.19, T:0.35


Found at i:1869 original size:18 final size:17

Alignment explanation


    Indices: 1842--1877  Score: 63
    Period size: 18  Copynumber: 2.1  Consensus size: 17

       1832 TTTCTCTTCA

                             
       1842 TCTATTTTTCTTCTAGT
          1 TCTATTTTTCTTCTAGT

                              
       1859 TCTAGTTTTTCTTCTAGT
          1 TCTA-TTTTTCTTCTAGT

             
       1877 T
          1 T

       1878 TTAGGTTGAG


Statistics
Matches: 18,  Mismatches: 0, Indels: 1
        0.95            0.00        0.05

Matches are distributed among these distances:
  17    4  0.22
  18   14  0.78

ACGTcount: A:0.11, C:0.17, G:0.08, T:0.64


Consensus pattern (17 bp):   
TCTATTTTTCTTCTAGT
Done.