Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01016358.1 Corchorus capsularis cultivar CVL-1 contig16379, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7756
ACGTcount: A:0.35, C:0.18, G:0.18, T:0.29


Found at i:1748 original size:46 final size:46

Alignment explanation


    Indices: 1681--1774  Score: 188
    Period size: 46  Copynumber: 2.0  Consensus size: 46

       1671 AAATCACAGG

                                                          
       1681 TGCCTTTGATCAAAGGCACAAACATGCCACAAATCAACAGCTGCCC
          1 TGCCTTTGATCAAAGGCACAAACATGCCACAAATCAACAGCTGCCC

                                                          
       1727 TGCCTTTGATCAAAGGCACAAACATGCCACAAATCAACAGCTGCCC
          1 TGCCTTTGATCAAAGGCACAAACATGCCACAAATCAACAGCTGCCC

              
       1773 TG
          1 TG

       1775 ATGAATCATC


Statistics
Matches: 48,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  46   48  1.00

ACGTcount: A:0.34, C:0.32, G:0.16, T:0.18


Consensus pattern (46 bp):   
TGCCTTTGATCAAAGGCACAAACATGCCACAAATCAACAGCTGCCC
Done.