Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01016368.1 Corchorus capsularis cultivar CVL-1 contig16389, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  27072

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--62
2
31.0
2
100
0
124
0
50
0
50
1.00
752--789
11
3.5
11
89
10
51
39
0
2
57
1.12
4678--4712
3
11.7
3
100
0
70
31
0
0
68
0.90
5092--5211
58
2.1
56
93
3
204
24
11
11
52
1.71
12334--12551
75
2.9
75
90
0
346
22
34
29
13
1.92
12535--12574
12
3.3
12
96
0
71
15
30
35
20
1.93
12460--12650
99
1.9
99
92
2
321
19
32
30
16
1.95
12385--12725
174
2.0
174
89
0
529
22
33
29
14
1.94
12559--12800
75
3.2
73
87
5
324
23
34
28
13
1.92
12334--12800
249
1.9
249
90
1
740
23
33
29
13
1.93
18043--18089
23
2.0
23
95
0
85
38
25
17
19
1.92

Tables:   1

The End!