genome.fa.s16372.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01016372.1 Corchorus capsularis cultivar CVL-1 contig16393, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  18444

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3914--3991	30	2.6	30	93	0	129	38	23	25	12	1.90
6558--6616	23	2.6	23	94	0	100	37	11	15	35	1.84
7014--7179	91	1.8	89	93	2	287	40	11	13	34	1.80
7510--7555	18	2.5	18	82	3	56	60	0	23	15	1.34
7852--7923	12	5.8	11	78	18	63	76	0	22	1	0.86
7861--7906	6	7.5	6	88	11	67	82	0	17	0	0.67
8194--8341	50	3.0	48	89	4	208	33	16	14	35	1.89
8784--9101	58	5.5	58	88	1	453	26	22	9	41	1.84
8895--8928	8	4.2	8	84	0	50	29	20	0	50	1.49
8784--9101	116	2.8	116	92	2	507	26	22	9	41	1.84
9069--9130	8	7.4	8	75	21	56	30	22	1	45	1.62
9081--9256	14	12.4	14	69	17	62	30	21	4	43	1.72
9076--9352	22	12.5	22	69	15	151	28	22	4	43	1.73
9089--9127	20	2.0	20	94	0	69	35	20	0	43	1.52
9157--9235	28	3.0	27	70	21	78	31	22	3	41	1.72
9222--9272	16	3.3	15	86	10	68	29	15	5	49	1.68
9376--9408	18	1.9	18	88	11	52	30	18	6	45	1.73
9467--9537	29	2.4	29	83	4	81	30	19	5	43	1.74
9426--9593	22	7.6	21	72	15	90	29	22	6	41	1.79
9494--9629	58	2.3	58	93	1	227	31	22	5	40	1.77
9679--9740	22	2.8	22	87	4	72	33	17	6	41	1.75
9706--9775	6	10.3	6	73	24	52	30	17	5	47	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9700--9780	14	5.8	13	74	21	51	29	18	6	45	1.73
9543--9774	58	4.0	56	79	7	189	30	19	6	42	1.78
9546--9736	96	2.0	96	84	4	251	30	20	6	42	1.78
9713--9779	34	1.9	36	90	6	111	28	19	5	46	1.73
13655--13694	19	2.1	19	86	9	55	85	0	10	5	0.75
15988--16024	19	1.9	19	88	0	56	21	8	18	51	1.72
17688--17760	33	2.2	33	95	0	128	28	19	24	27	1.98
17698--17752	18	3.2	18	66	23	55	30	25	18	25	1.98

Tables:   1

The End!