Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01016377.1 Corchorus capsularis cultivar CVL-1 contig16398, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1683
ACGTcount: A:0.25, C:0.20, G:0.26, T:0.29


Found at i:294 original size:10 final size:10

Alignment explanation


    Indices: 274--325  Score: 59
    Period size: 10  Copynumber: 4.8  Consensus size: 10

        264 CGGATGGCAT

                       
        274 GGCATTGGCCG
          1 GGCA-TGGCCG

                      
        285 GGCATGGCCG
          1 GGCATGGCCG

                         
        295 GGCATGGTGCGCG
          1 GGCAT-G-GC-CG

             *        
        308 GACATGGCCG
          1 GGCATGGCCG

                    
        318 GGCATGGC
          1 GGCATGGC

        326 TTGGTGTCGA


Statistics
Matches: 36,  Mismatches: 2, Indels: 7
        0.80            0.04        0.16

Matches are distributed among these distances:
  10   20  0.56
  11    7  0.19
  12    3  0.08
  13    6  0.17

ACGTcount: A:0.12, C:0.27, G:0.48, T:0.13


Consensus pattern (10 bp):   
GGCATGGCCG
Done.