Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01016378.1 Corchorus capsularis cultivar CVL-1 contig16399, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  89805

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2343--2392
25
2.0
25
88
0
73
50
12
6
32
1.64
3289--3314
2
13.0
2
100
0
52
50
0
0
50
1.00
5183--5209
6
4.5
6
100
0
54
55
14
0
29
1.40
12006--12064
24
2.4
24
82
2
64
16
16
6
59
1.58
12377--12403
6
4.5
6
100
0
54
55
14
0
29
1.40
19813--20068
129
2.0
125
93
3
431
49
4
14
31
1.64
20780--20826
23
2.0
23
87
0
67
51
6
4
38
1.47
20832--20950
53
2.2
54
96
1
222
52
7
5
35
1.52
21123--21161
2
20.5
2
84
10
55
51
0
2
46
1.14
23321--23618
141
2.2
137
84
4
397
35
15
22
26
1.94
23286--23928
312
2.1
312
90
2
1004
35
14
22
27
1.94
23633--23989
138
2.7
136
83
7
455
35
14
22
26
1.94
24029--24370
120
2.9
121
87
1
510
33
21
22
22
1.97
31136--31663
131
4.0
130
85
6
681
34
16
13
36
1.88
31136--31615
261
1.8
261
87
4
725
33
16
13
35
1.88
42703--42749
24
2.0
24
95
0
85
57
14
10
17
1.65
44547--44582
19
1.9
18
88
5
54
41
2
22
33
1.68
51801--51893
33
2.8
32
77
4
96
35
19
24
20
1.96
53154--53306
74
2.1
74
98
0
297
29
4
20
45
1.71
53178--53302
36
3.4
35
64
9
88
31
4
20
44
1.72
53320--53356
15
2.7
14
84
16
51
37
0
10
51
1.37
53320--53360
13
3.1
14
80
19
52
36
0
12
51
1.40
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
54519--54554
19
1.9
18
88
5
54
41
2
22
33
1.68
54807--54842
19
1.9
18
88
5
54
41
2
22
33
1.68
54455--55031
288
2.0
288
98
0
1109
37
11
19
30
1.88
56124--56157
16
2.2
16
89
5
52
29
2
8
58
1.43
59170--59357
72
2.6
72
88
5
263
40
12
14
32
1.84
59313--59494
74
2.5
73
83
2
220
39
9
12
39
1.75
59360--59527
74
2.2
74
82
4
185
41
10
12
35
1.78
63211--63251
20
2.0
20
100
0
82
26
0
24
48
1.51
63284--63324
20
2.0
20
90
0
64
29
2
21
46
1.64
63192--63331
73
1.9
73
95
0
253
27
9
18
45
1.80
65787--65839
27
2.0
27
84
0
70
30
33
3
32
1.76
65971--66007
11
3.2
12
85
11
51
56
16
10
16
1.66
65952--66003
11
4.7
11
81
6
52
55
17
13
13
1.69
68600--68651
11
4.8
11
75
13
54
76
17
5
0
0.97
68605--68663
16
3.7
16
74
17
59
71
18
8
1
1.20
68804--68924
63
2.0
61
91
3
197
23
12
22
41
1.88
68956--69143
91
2.0
92
90
3
297
40
10
17
31
1.83
83648--83694
24
2.0
24
82
0
58
12
17
59
10
1.60

Tables:   1

The End!