Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01016379.1 Corchorus capsularis cultivar CVL-1 contig16400, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  24073

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1147--1242
31
3.2
30
73
11
88
34
12
21
31
1.91
1725--1760
13
2.6
14
86
13
56
38
8
16
36
1.79
4406--4430
2
12.5
2
100
0
50
52
0
0
48
1.00
10630--10669
20
2.0
20
95
0
71
30
27
20
22
1.98
10732--10779
24
2.0
24
95
0
87
39
4
27
29
1.75
13219--13244
13
2.0
13
100
0
52
23
7
30
38
1.83
18448--18686
78
3.2
77
90
7
359
37
12
0
49
1.43
18448--18680
70
3.2
70
83
10
306
37
12
0
49
1.44
20402--20558
50
3.0
50
64
17
129
40
11
1
47
1.48
20495--20529
17
2.0
18
88
5
54
40
8
0
51
1.33
20300--20558
106
2.4
109
92
5
425
38
11
1
47
1.50

Tables:   1

The End!