Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01001638.1 Corchorus capsularis cultivar CVL-1 contig01638, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 717

Length: 1196
ACGTcount: A:0.33, C:0.19, G:0.14, T:0.34


Found at i:253 original size:20 final size:18

Alignment explanation


    Indices: 207--256  Score: 55
    Period size: 20  Copynumber: 2.6  Consensus size: 18

        197 TCCTTCATGC

                           *  
        207 CTTTCTTTCTCTCTTCTT
          1 CTTTCTTTCTCTCTTATT

                                  
        225 CTTCATCTTTCTCGTCCTTATT
          1 CTT--TCTTTCTC-T-CTTATT

                      
        247 CTTTCTTTCT
          1 CTTTCTTTCT

        257 TTATATTTTT


Statistics
Matches: 27,  Mismatches: 1, Indels: 6
        0.79            0.03        0.18

Matches are distributed among these distances:
  18    3  0.11
  20   15  0.56
  21    1  0.04
  22    8  0.30

ACGTcount: A:0.04, C:0.32, G:0.02, T:0.62


Consensus pattern (18 bp):   
CTTTCTTTCTCTCTTATT
Done.