Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01016380.1 Corchorus capsularis cultivar CVL-1 contig16401, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2367
ACGTcount: A:0.34, C:0.15, G:0.18, T:0.33


Found at i:1291 original size:2 final size:2

Alignment explanation


    Indices: 1284--1308  Score: 50
    Period size: 2  Copynumber: 12.5  Consensus size: 2

       1274 ATATACCTAC

                                                 
       1284 AT AT AT AT AT AT AT AT AT AT AT AT A
          1 AT AT AT AT AT AT AT AT AT AT AT AT A

       1309 ACTCCGGCCG


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   23  1.00

ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48


Consensus pattern (2 bp):   
AT

Found at i:1727 original size:30 final size:30

Alignment explanation


    Indices: 1691--1751  Score: 77
    Period size: 30  Copynumber: 2.0  Consensus size: 30

       1681 TAAAATCTCA

                     * *                  
       1691 TTTTTTTTCCTTGAAGAATGCTATTAAATT
          1 TTTTTTTTCATAGAAGAATGCTATTAAATT

                    *     *          *    
       1721 TTTTTTTTGATAGATGAATGCTATTGAATT
          1 TTTTTTTTCATAGAAGAATGCTATTAAATT

             
       1751 T
          1 T

       1752 GAAGCTCGAA


Statistics
Matches: 26,  Mismatches: 5, Indels: 0
        0.84            0.16        0.00

Matches are distributed among these distances:
  30   26  1.00

ACGTcount: A:0.26, C:0.07, G:0.13, T:0.54


Consensus pattern (30 bp):   
TTTTTTTTCATAGAAGAATGCTATTAAATT
Done.