genome.fa.s16382.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01016382.1 Corchorus capsularis cultivar CVL-1 contig16403, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  39020

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16--1270	199	6.3	198	88	3	1683	34	18	13	33	1.90
1--1270	394	3.2	391	87	3	1680	34	18	13	33	1.90
11--1275	593	2.1	596	86	3	1784	34	18	13	33	1.90
1354--1412	25	2.4	25	88	0	91	18	13	30	37	1.90
5211--5316	26	4.0	27	84	6	137	55	8	18	16	1.66
5216--5316	53	1.9	53	89	4	159	56	7	18	16	1.64
5430--5675	7	35.7	7	66	15	93	57	2	21	18	1.51
5431--5632	34	5.7	34	81	11	237	58	2	20	17	1.52
5741--5798	15	4.0	14	78	8	71	55	5	17	22	1.62
5733--5796	29	2.2	29	86	5	85	53	4	20	21	1.64
5741--6041	42	7.0	43	77	15	216	53	5	18	21	1.65
5809--6054	21	11.8	21	74	17	169	54	5	18	21	1.63
5809--5969	22	7.5	22	85	2	195	53	6	19	21	1.66
5809--6066	42	6.2	41	82	10	267	53	5	19	21	1.65
5907--5970	15	4.3	15	75	11	60	59	4	14	21	1.53
6119--6177	27	2.1	28	90	3	93	61	3	18	16	1.49
6887--6919	10	3.3	10	91	0	57	60	24	0	15	1.35
7702--8197	198	2.5	195	86	3	670	32	19	13	34	1.91
11321--11369	2	22.5	2	88	12	62	46	0	8	44	1.33
11766--11842	29	2.7	29	81	2	93	33	11	36	18	1.87
15237--15484	22	11.6	21	72	15	118	18	18	6	56	1.62
15238--15524	42	6.7	42	74	9	167	18	19	6	55	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15757--15818	16	3.8	16	78	14	63	25	17	8	48	1.75
15776--16027	55	4.6	55	90	2	380	25	18	7	49	1.73
15934--16018	25	3.2	25	70	20	73	25	18	5	49	1.70
16897--17132	50	4.7	50	79	4	242	36	11	8	42	1.73
18477--18594	61	1.9	61	91	0	191	24	9	25	40	1.85
19909--19934	13	2.0	13	100	0	52	23	15	0	61	1.33
19988--20069	28	3.0	28	84	10	100	43	21	17	17	1.87
21516--21584	30	2.3	31	89	2	104	39	1	8	50	1.42
22740--22795	24	2.5	22	88	11	87	67	26	0	5	1.11
30432--30475	18	2.2	20	80	19	65	20	2	27	50	1.60
30438--30477	18	2.2	18	100	0	80	20	0	27	52	1.46
35451--35813	183	2.0	178	93	2	618	26	12	14	47	1.79

Tables:   1

The End!