Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01016386.1 Corchorus capsularis cultivar CVL-1 contig16407, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  60306

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5481--5589
33
3.3
33
98
0
209
43
19
12
24
1.86
5481--5622
66
2.2
66
85
2
187
41
19
11
26
1.86
5615--5719
33
3.2
33
79
2
122
45
20
9
23
1.80
12814--12858
21
2.1
21
87
0
63
6
35
17
40
1.76
12908--12938
14
2.2
14
94
0
53
12
22
6
58
1.58
12912--12962
21
2.4
20
84
12
66
11
27
11
49
1.74
13971--14060
46
2.0
46
93
0
153
28
25
11
34
1.90
15289--15363
30
2.5
30
80
4
89
28
29
30
12
1.92
24237--24295
20
3.0
20
78
12
68
38
0
6
54
1.27
37260--37293
11
3.2
10
84
15
50
29
2
17
50
1.61
39084--39140
30
1.9
30
92
0
96
24
22
29
22
1.99
40835--40889
29
2.0
26
86
13
76
25
21
29
23
1.99
43669--43731
30
2.1
30
85
5
83
20
31
15
31
1.94
44429--44461
13
2.4
14
90
5
50
9
3
0
87
0.63
51795--51851
30
1.9
30
85
7
80
29
17
31
21
1.96
52723--52762
21
1.9
21
85
10
55
30
22
20
27
1.98
53516--53572
30
1.9
30
96
0
105
28
19
31
21
1.97
54466--54552
30
2.9
30
92
0
138
28
18
29
22
1.97
54534--54960
241
1.8
232
90
4
683
34
16
25
22
1.96
57838--57906
24
2.9
23
75
12
59
2
31
10
55
1.48
59769--59806
6
6.3
6
91
8
60
52
13
0
34
1.40

Tables:   1

The End!