Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01016388.1 Corchorus capsularis cultivar CVL-1 contig16409, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  18556

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
493--562
26
2.7
26
84
2
86
45
24
12
17
1.83
1780--1826
24
2.0
24
82
0
58
14
12
4
68
1.36
3345--3380
19
1.9
18
88
5
54
41
2
22
33
1.68
5388--5523
62
2.2
62
90
1
218
38
11
0
49
1.45
5454--5616
78
2.1
78
97
0
308
38
14
0
47
1.44
8132--8276
39
3.7
39
85
1
202
43
28
8
18
1.80
8133--8283
78
1.9
78
93
0
257
43
28
10
17
1.83
13282--13311
15
2.0
15
100
0
60
33
33
6
26
1.83
14145--14175
16
1.9
16
93
0
53
35
9
0
54
1.33
14752--15497
201
3.7
201
89
3
1085
34
17
12
34
1.88
14752--15497
405
1.9
396
88
3
1116
34
17
12
34
1.88
15522--15592
21
3.5
20
80
5
72
35
12
7
45
1.70
16763--16806
23
1.9
23
81
9
54
27
0
20
52
1.47
17751--17816
29
2.3
29
100
0
132
40
9
9
40
1.68
17903--18264
188
1.9
187
91
4
599
42
12
9
35
1.76

Tables:   1

The End!