genome.fa.s16389.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01016389.1 Corchorus capsularis cultivar CVL-1 contig16410, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  76767

Tables:   1   

This is table  1  of  1  ( 60 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
135--183	25	2.0	25	84	4	64	36	0	28	34	1.58
2822--2867	23	2.0	23	95	0	83	47	10	13	28	1.76
3266--3594	8	41.9	8	71	8	149	44	6	22	26	1.77
3266--3497	24	9.7	24	78	1	205	46	5	21	26	1.73
3523--3586	14	5.0	14	71	21	59	43	3	23	29	1.69
3516--3594	22	3.6	22	81	8	90	41	3	25	29	1.73
3524--3598	36	2.1	36	100	0	150	40	2	25	32	1.70
3873--4010	72	1.9	72	83	0	177	23	26	16	34	1.95
7529--7566	19	2.1	18	90	5	58	31	21	2	44	1.66
7545--7576	11	2.9	11	90	0	55	43	18	0	37	1.51
10669--10741	17	4.4	17	84	1	76	15	54	20	9	1.68
11874--11902	12	2.3	13	94	5	51	55	20	6	17	1.65
17696--17765	34	2.0	35	88	2	106	57	2	10	30	1.46
19505--19538	11	3.2	10	84	15	50	50	17	2	29	1.61
28036--28191	14	10.9	13	69	15	51	51	2	23	21	1.60
28002--28513	43	11.8	42	79	10	428	53	4	21	20	1.63
28002--28514	128	4.1	126	82	10	565	53	4	21	20	1.63
28009--28304	85	3.5	85	92	1	443	53	3	22	20	1.62
28201--28276	14	5.4	14	70	19	50	55	3	19	21	1.59
28272--28318	14	3.4	14	75	0	58	53	4	23	19	1.63
28293--28517	85	2.6	85	76	13	190	55	4	20	19	1.61
28137--28460	156	2.1	155	88	4	483	53	4	21	20	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28002--28514	64	7.9	65	75	13	375	53	4	21	20	1.63
28473--28522	22	2.2	23	82	10	59	66	6	16	12	1.43
28003--28528	21	24.2	20	67	17	112	53	4	21	20	1.62
28570--28635	21	3.4	21	74	16	70	56	3	21	19	1.56
28562--28654	37	2.6	38	81	8	113	59	2	20	18	1.48
28642--28698	21	2.6	22	77	5	62	56	5	15	22	1.60
28642--28710	22	3.2	22	72	15	63	55	4	15	24	1.59
32966--33018	21	2.5	20	79	8	61	30	30	32	7	1.85
44749--44833	30	2.8	28	83	15	91	44	3	12	38	1.60
44760--44833	31	2.4	31	84	8	98	50	4	14	31	1.62
50179--50231	21	2.6	21	87	3	72	28	32	32	7	1.85
55738--55800	33	1.9	33	93	3	110	33	12	4	49	1.62
62989--63475	50	9.8	50	89	2	696	35	11	29	22	1.90
62988--63066	27	3.1	27	65	26	71	36	10	30	22	1.87
62998--63183	27	7.3	27	61	20	87	33	11	31	23	1.90
63769--63844	28	2.8	28	84	8	102	17	13	26	43	1.85
64482--64634	36	4.2	37	94	2	249	27	20	9	42	1.82
64612--64681	32	2.2	32	94	0	122	31	24	11	32	1.91
64482--64684	36	5.7	36	84	9	188	27	22	9	40	1.85
64676--64885	74	2.9	72	90	4	311	23	26	9	40	1.84
64662--64904	37	6.7	36	78	7	235	23	26	9	41	1.84
64890--65020	36	3.7	36	78	11	101	26	14	12	46	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64976--65301	76	4.2	76	86	6	458	24	20	10	44	1.83
65009--65297	41	7.4	40	80	10	330	24	21	10	44	1.83
64976--65297	117	2.8	116	78	12	379	25	20	9	44	1.82
65324--65886	37	14.8	36	81	10	486	25	19	9	45	1.80
65314--65886	148	3.8	146	76	13	562	25	19	9	45	1.80
65588--65928	111	3.1	111	83	4	312	26	21	8	43	1.80
65955--66123	42	4.0	42	93	2	279	26	18	12	42	1.86
66082--66158	35	2.2	36	83	6	95	28	20	10	40	1.86
69527--69602	26	2.8	26	76	11	82	42	21	18	18	1.90
70442--70485	20	2.1	21	84	12	56	34	27	4	34	1.77
72550--72645	22	4.4	22	78	19	78	19	17	8	54	1.68
72676--72753	21	3.7	21	82	5	95	16	17	7	57	1.62
72659--72753	43	2.2	43	83	9	113	16	20	6	56	1.61
72719--72773	22	2.5	23	77	11	62	21	20	5	52	1.66
72677--72773	43	2.3	42	80	8	99	18	18	7	55	1.65
73069--73261	55	3.5	55	90	0	296	25	17	6	50	1.69

Tables:   1

The End!