Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01016390.1 Corchorus capsularis cultivar CVL-1 contig16411, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3937

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1176--1235
22
2.7
22
84
5
68
50
3
23
23
1.64
1232--1541
55
5.6
55
85
0
433
49
7
18
24
1.73
1242--1541
110
2.7
110
96
0
555
49
7
18
25
1.73
1510--1564
18
3.2
17
75
14
60
47
7
18
27
1.74
1849--2215
86
4.2
84
74
15
252
53
5
21
18
1.65
1818--2186
22
16.8
22
72
16
227
54
5
21
18
1.64
2169--2208
16
2.6
16
88
4
64
55
7
17
20
1.66
1866--2208
43
7.7
46
74
15
127
55
6
20
17
1.64
1818--2187
21
16.9
22
73
15
202
54
5
21
18
1.64
2211--2300
21
4.3
21
76
8
67
53
6
18
21
1.67
2203--2285
42
2.0
42
80
4
96
50
7
19
22
1.72
2365--2427
27
2.3
28
78
5
85
60
0
22
17
1.36
2372--2435
27
2.2
28
81
10
85
60
0
23
15
1.34
3283--3402
48
2.4
50
79
8
129
35
14
8
42
1.75

Tables:   1

The End!