genome.fa.s16394.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01016394.1 Corchorus capsularis cultivar CVL-1 contig16415, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  4655

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
784--1089	55	5.6	55	90	0	488	49	6	18	25	1.72
1098--1163	31	2.1	32	88	2	98	48	6	19	25	1.72
1274--1372	51	2.0	49	88	4	144	54	3	23	19	1.58
1317--1444	35	3.6	35	88	2	166	54	2	25	17	1.55
1273--1544	121	2.2	120	80	11	286	55	3	22	18	1.58
1449--1515	29	2.3	29	84	5	82	59	4	16	19	1.53
1445--1515	15	4.9	14	73	14	63	59	4	16	19	1.54
1455--1782	108	3.1	108	75	13	419	54	6	18	20	1.65
1592--1723	29	4.6	28	69	12	81	57	4	18	19	1.57
1497--1851	21	16.9	21	71	17	132	53	6	19	20	1.66
1575--1929	71	5.1	71	69	17	208	53	5	18	21	1.65
1384--2001	208	3.0	209	88	6	864	53	5	19	20	1.65
1653--1723	15	4.9	14	73	14	63	59	4	16	19	1.54
1418--1847	22	20.3	21	71	15	165	54	5	19	20	1.64
1706--1851	64	2.3	64	82	9	181	51	6	20	21	1.70
1848--2001	21	7.9	21	66	25	90	50	5	20	22	1.69
1868--1900	14	2.3	15	85	15	52	48	6	24	21	1.72
1896--1929	14	2.3	15	90	5	52	55	5	14	23	1.61
1901--2013	42	2.7	40	76	9	109	51	6	19	23	1.69
1803--1943	35	3.9	36	89	3	214	51	6	21	20	1.69
1807--1943	71	1.9	71	93	0	238	51	6	21	20	1.69
2074--2120	13	3.5	13	72	16	51	61	0	25	12	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2065--2127	27	2.3	28	83	5	94	61	0	20	17	1.34
2776--2828	22	2.4	22	84	9	63	54	0	13	32	1.39
3384--3419	19	1.9	18	88	5	54	41	2	22	33	1.68

Tables:   1

The End!