Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01016395.1 Corchorus capsularis cultivar CVL-1 contig16416, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  10420

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46--132
26
3.2
26
70
20
79
48
5
19
26
1.71
46--143
26
3.7
26
71
20
76
47
6
20
25
1.73
80--238
66
2.4
65
89
6
228
47
6
17
27
1.73
110--209
35
3.0
33
64
29
77
48
6
18
28
1.71
149--237
29
3.2
29
69
23
91
49
7
15
26
1.72
196--347
71
2.1
70
80
9
166
50
7
17
25
1.71
261--326
31
2.1
31
85
2
87
51
6
18
24
1.68
437--535
51
2.0
50
88
4
146
54
3
23
19
1.58
483--571
35
2.4
37
83
5
110
53
2
25
17
1.55
561--664
22
4.4
23
67
22
65
57
4
15
22
1.57
552--657
50
2.1
50
82
8
126
57
3
17
20
1.55
606--725
64
1.9
63
81
11
147
53
5
19
21
1.66
628--897
21
13.7
21
65
19
109
49
7
21
21
1.73
687--827
35
3.9
36
90
3
205
52
6
19
21
1.68
695--832
71
1.9
71
92
0
231
50
7
20
21
1.72
752--784
14
2.3
15
85
15
52
48
6
24
21
1.72
653--883
57
4.1
57
73
12
190
49
7
21
21
1.74
780--813
14
2.3
15
90
5
52
55
5
14
23
1.61
959--1005
13
3.5
13
72
16
51
61
0
25
12
1.31
950--1012
27
2.3
28
83
5
94
61
0
20
17
1.34
2238--2268
13
2.5
13
94
5
55
0
25
6
67
1.14

Tables:   1

The End!