Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01016396.1 Corchorus capsularis cultivar CVL-1 contig16417, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  18575

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1139--1235
33
2.9
33
84
6
124
11
26
39
22
1.88
1434--1498
30
2.2
30
83
5
87
21
16
21
40
1.92
2707--2753
22
2.1
23
88
4
69
57
6
4
31
1.43
2718--2767
22
2.3
22
82
6
57
60
4
4
32
1.34
6951--7030
40
2.0
40
97
0
151
37
13
13
35
1.85
9095--9134
1
40.0
1
100
0
80
0
0
0
100
0.00
16220--16431
111
1.9
111
84
0
280
26
24
22
27
2.00
16071--16564
270
1.8
268
80
5
593
27
23
22
26
1.99
15717--17829
431
4.9
429
84
3
2756
28
21
21
28
1.99
17076--17287
111
1.9
111
79
5
241
28
21
22
27
1.99
15738--17825
859
2.4
857
89
1
3175
28
21
21
28
1.99
17515--17718
111
1.8
111
81
6
252
32
21
23
23
1.98
17541--18129
300
2.0
300
89
2
905
29
23
20
26
1.99
17921--18345
158
2.7
155
75
9
376
27
21
21
29
1.98

Tables:   1

The End!