Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01016397.1 Corchorus capsularis cultivar CVL-1 contig16418, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  11489

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
195--726
159
3.4
159
86
3
682
28
23
20
27
1.99
650--861
111
1.9
111
86
0
298
29
23
21
25
1.99
514--1026
270
1.9
267
80
6
606
28
23
20
28
1.99
762--1346
161
3.7
156
77
6
514
28
21
20
29
1.98
78--1773
589
2.9
584
84
4
2227
27
22
20
28
1.99
1239--1456
111
2.0
111
81
1
258
28
22
21
27
1.99
1103--2584
428
3.5
427
90
0
2259
27
21
21
29
1.99
1666--1869
111
1.8
111
84
4
277
27
22
22
27
1.99
3080--3188
7
14.7
7
69
12
58
16
23
2
56
1.53
3054--3146
48
1.9
48
82
4
116
16
22
3
58
1.52
3123--3200
28
2.8
28
78
5
95
16
19
2
61
1.45
3149--3341
7
26.7
7
65
11
50
19
20
2
56
1.53
3123--3540
14
29.7
14
64
16
82
20
19
3
56
1.55
3200--3608
20
19.9
20
70
16
223
22
19
3
55
1.58
3405--3480
15
5.6
14
72
18
54
18
19
1
60
1.43
3384--3526
41
3.6
41
77
10
131
20
17
2
58
1.51
3470--3540
36
2.0
36
86
5
99
23
15
2
57
1.51
3549--3629
42
1.9
42
82
9
103
22
19
1
56
1.49
5947--6007
29
2.1
29
96
0
113
16
32
16
34
1.91
7244--7315
26
2.7
26
78
2
72
41
27
13
16
1.87
7756--7969
111
1.9
111
85
1
295
30
22
22
23
1.99
7387--8800
730
1.9
730
92
0
2382
28
22
21
28
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
8589--9016
158
2.7
158
77
9
426
27
22
21
28
1.99
8906--9127
111
2.0
111
80
6
245
27
22
21
28
1.99
8066--9525
428
3.4
428
85
2
1913
28
22
21
28
1.99
9336--9536
111
1.8
111
82
2
260
28
21
22
26
1.99
9775--9810
19
1.9
18
88
5
54
41
2
22
33
1.68

Tables:   1

The End!