Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01000164.1 Corchorus capsularis cultivar CVL-1 contig00164, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 978

Length: 1630
ACGTcount: A:0.29, C:0.23, G:0.18, T:0.30


Found at i:664 original size:33 final size:34

Alignment explanation


    Indices: 627--700  Score: 116
    Period size: 33  Copynumber: 2.2  Consensus size: 34

        617 CCGAGTCGTT

                                              
        627 TGGCCGGTTG-TAGCCGGACATGTCCATGCCGCG
          1 TGGCCGGTTGATAGCCGGACATGTCCATGCCGCG

                        *                *    
        660 TGGCCGG-TGATGGCCGGACATGTCCATGTCGCG
          1 TGGCCGGTTGATAGCCGGACATGTCCATGCCGCG

                    
        693 TGGCCGGT
          1 TGGCCGGT

        701 CTTGTGGCCG


Statistics
Matches: 37,  Mismatches: 2, Indels: 3
        0.88            0.05        0.07

Matches are distributed among these distances:
  32    2  0.05
  33   35  0.95

ACGTcount: A:0.11, C:0.28, G:0.39, T:0.22


Consensus pattern (34 bp):   
TGGCCGGTTGATAGCCGGACATGTCCATGCCGCG
Done.