genome.fa.s16401.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01016401.1 Corchorus capsularis cultivar CVL-1 contig16422, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  150454

Tables:   1   

This is table  1  of  1  ( 53 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
214--243	11	2.7	11	94	0	51	53	16	0	30	1.44
241--285	13	3.5	13	90	3	74	55	8	13	22	1.65
241--293	25	2.1	25	89	6	81	58	9	11	20	1.60
5272--5308	19	2.0	18	89	5	56	40	8	21	29	1.82
5428--5452	10	2.5	10	100	0	50	40	24	8	28	1.83
7102--7150	22	2.2	22	100	0	98	38	18	18	24	1.93
13661--13697	19	2.0	18	89	5	56	40	8	21	29	1.82
13817--13841	10	2.5	10	100	0	50	40	24	8	28	1.83
19330--19386	30	1.9	30	85	0	78	31	15	28	24	1.96
23701--23740	19	2.2	18	86	4	53	30	20	5	45	1.72
35533--35600	21	3.2	21	72	0	73	27	11	25	35	1.91
42691--42715	6	4.2	6	100	0	50	68	0	0	32	0.90
44329--44354	13	2.0	13	100	0	52	69	7	7	15	1.35
61898--61929	12	2.7	12	95	0	55	25	40	25	9	1.85
62797--62840	22	2.0	22	86	0	61	22	22	25	29	1.99
68519--68553	16	2.1	17	94	5	63	20	11	34	34	1.88
72631--72737	22	4.9	22	71	14	60	33	14	9	42	1.78
72698--72783	45	1.9	45	81	9	104	38	15	10	36	1.81
72835--72937	23	4.5	22	78	10	93	40	15	7	35	1.76
72855--72960	46	2.3	44	80	6	113	38	15	9	36	1.79
72654--73144	22	22.6	22	71	14	227	36	16	9	37	1.82
73072--73144	19	3.6	20	87	7	94	30	16	10	42	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74137--74203	30	2.2	29	80	15	75	53	13	20	11	1.71
74339--74697	67	5.2	69	87	5	487	26	26	18	28	1.98
74911--75398	90	5.5	91	85	5	513	26	18	25	29	1.98
75734--75786	21	2.6	21	84	3	63	30	30	32	7	1.85
86605--86650	24	1.9	24	90	0	74	23	6	13	56	1.60
95795--95982	43	4.5	42	82	5	186	31	14	16	36	1.89
95964--96367	93	4.3	94	92	2	627	36	11	10	41	1.75
95964--96367	47	8.7	47	89	1	607	36	11	10	41	1.75
97053--97149	38	2.6	37	80	4	122	55	9	20	14	1.66
97962--98029	7	9.3	7	75	12	57	57	0	4	38	1.19
110816--111362	54	10.1	54	87	1	736	27	16	23	33	1.96
111227--111316	29	3.2	29	62	17	73	25	15	22	36	1.93
111352--111758	43	9.5	43	89	4	529	26	15	27	30	1.96
111737--112535	90	9.2	90	86	5	874	25	15	25	32	1.96
111926--112333	79	5.0	79	80	9	453	25	15	27	31	1.96
124413--124448	18	2.0	18	89	10	56	33	22	2	41	1.68
130809--130860	24	2.2	24	82	0	59	26	9	21	42	1.83
130878--130960	33	2.6	33	83	9	102	32	7	18	42	1.77
132783--132864	33	2.6	32	86	9	98	24	41	25	8	1.83
137469--137505	15	2.6	14	91	8	58	37	10	5	45	1.62
138269--138305	16	2.3	17	81	13	51	72	0	13	13	1.11
138273--138305	8	4.2	8	88	3	50	75	0	12	12	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
139073--139120	23	2.1	23	88	0	69	27	20	10	41	1.85
139307--139726	8	53.0	8	65	19	118	27	21	5	45	1.73
139307--139726	22	17.7	24	71	17	186	27	21	5	45	1.73
139347--139389	21	2.1	20	91	4	68	25	18	0	55	1.42
139531--139654	28	4.4	27	80	8	113	30	21	4	43	1.71
141129--141164	18	2.0	18	89	10	56	33	22	2	41	1.68
145204--145643	67	6.6	68	84	5	479	22	18	16	43	1.88
145204--145691	132	3.7	131	81	7	513	22	18	16	43	1.88
148305--148387	39	2.1	40	84	2	105	28	20	9	40	1.84

Tables:   1

The End!