genome.fa.s16402.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01016402.1 Corchorus capsularis cultivar CVL-1 contig16423, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  76148

Tables:   1   

This is table  1  of  1  ( 76 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--47	16	3.0	16	88	11	71	82	0	17	0	0.66
9--46	12	3.2	12	82	17	53	84	0	15	0	0.63
1685--2125	54	8.1	54	91	1	693	28	16	21	33	1.95
1685--2125	109	4.1	108	94	0	702	28	16	21	33	1.95
1685--2125	163	2.7	162	90	1	693	28	16	21	33	1.95
2575--2638	27	2.2	29	81	13	87	12	21	1	64	1.36
2699--2900	21	9.8	21	71	16	104	22	20	5	51	1.67
2709--3193	101	4.8	99	75	15	376	21	20	5	52	1.67
2832--2987	57	2.8	55	85	4	186	21	20	4	53	1.63
2739--3117	158	2.4	158	85	4	478	22	19	5	52	1.65
3196--3260	15	4.4	15	74	18	64	21	18	4	55	1.60
2760--3259	22	24.2	20	66	22	143	21	19	5	53	1.66
3204--3267	29	2.2	28	83	10	76	20	20	4	54	1.62
2765--3270	259	2.0	256	84	7	673	21	19	5	52	1.66
3290--3437	7	20.7	7	68	14	79	17	22	2	57	1.52
3290--3394	14	7.4	14	74	15	90	16	22	1	59	1.47
3316--3436	29	3.9	29	76	14	98	18	21	3	57	1.55
3383--3452	14	4.9	14	75	18	63	21	18	4	55	1.59
3245--3415	36	4.8	37	83	11	184	17	23	3	54	1.58
3383--3452	29	2.4	29	81	9	81	21	18	4	55	1.59
3442--3492	26	2.0	26	92	7	86	27	15	3	52	1.60
3446--3500	26	2.1	27	89	3	85	25	16	3	54	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3471--3550	33	2.4	33	82	16	101	22	16	5	56	1.59
4544--4588	23	1.9	24	86	4	65	51	20	20	8	1.73
7281--7348	25	2.7	25	93	0	109	39	26	14	19	1.90
7424--7535	54	2.1	54	82	0	134	26	13	25	34	1.93
7537--7888	43	8.2	43	88	5	460	26	15	25	32	1.95
7867--8136	90	3.0	90	91	0	432	26	15	23	34	1.95
8056--8463	79	5.0	79	81	6	456	24	15	27	32	1.95
7966--8463	158	3.0	163	81	7	531	24	15	26	32	1.95
8302--8600	90	3.3	89	88	2	429	26	17	25	30	1.98
12817--13262	67	6.7	68	84	4	455	21	17	16	44	1.86
12819--13325	132	3.8	130	78	8	484	21	18	16	43	1.88
12894--13325	200	2.2	198	80	8	473	21	18	17	41	1.90
12893--13325	67	6.5	65	80	10	209	21	18	17	42	1.90
17801--17851	21	2.4	21	74	6	50	21	3	7	66	1.34
19655--19693	19	2.1	19	95	0	69	38	17	10	33	1.84
21867--22310	48	9.1	49	87	3	506	22	29	15	32	1.94
21878--22297	97	4.3	97	83	4	481	22	30	15	31	1.95
22388--22549	63	2.6	61	80	8	175	27	26	14	31	1.95
31173--31205	16	2.1	16	100	0	66	45	24	6	24	1.75
37966--38230	132	2.0	131	91	1	431	49	2	10	37	1.51
46710--46757	2	24.0	2	82	0	60	54	0	0	45	0.99
48625--48781	74	2.1	74	89	0	233	22	26	8	42	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48700--50177	770	1.9	778	87	5	2203	29	22	8	40	1.83
51073--51099	8	3.4	8	100	0	54	29	11	25	33	1.91
54043--54205	60	2.7	61	88	5	235	34	14	19	30	1.92
54103--54205	31	3.4	31	70	20	108	35	14	20	29	1.92
54237--54336	31	3.3	31	71	10	89	25	17	21	37	1.94
54237--54395	60	2.7	60	82	2	187	29	16	17	35	1.93
61865--61900	18	2.0	18	94	0	63	33	19	25	22	1.97
66732--66769	11	3.5	11	89	10	51	39	0	2	57	1.12
67204--67233	15	2.0	15	100	0	60	33	40	13	13	1.83
67885--67931	24	2.0	24	83	8	60	36	6	8	48	1.59
68063--68089	12	2.2	12	100	0	54	25	7	25	40	1.82
68317--68365	24	2.0	25	84	4	64	34	28	0	36	1.58
70678--70719	22	1.9	22	90	0	66	30	11	4	52	1.59
70834--70886	22	2.4	23	81	6	65	39	15	7	37	1.75
70858--71127	22	12.5	22	72	9	164	34	14	10	40	1.81
70899--70961	23	2.7	23	87	0	90	38	14	7	39	1.75
71233--71357	22	5.6	22	73	5	99	35	12	9	43	1.74
71345--71371	14	1.9	14	100	0	54	37	3	14	44	1.63
71359--71419	21	2.7	22	82	12	70	36	9	9	44	1.71
71517--71574	22	2.6	22	73	10	55	36	22	6	34	1.81
71660--71748	22	3.9	23	77	11	85	42	16	7	32	1.77
72980--73061	38	2.2	37	84	2	119	60	12	14	12	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
73395--73448	22	2.5	22	79	14	58	35	11	5	48	1.62
73468--73515	22	2.2	22	88	3	71	27	12	6	54	1.61
73534--73636	23	4.6	22	73	3	71	41	17	10	30	1.83
73680--73727	22	2.2	22	88	3	71	27	12	6	54	1.61
73432--73857	212	2.0	212	100	0	852	36	13	12	37	1.83
73908--73992	23	3.7	23	84	1	100	37	14	7	41	1.73
73869--73992	45	2.8	45	80	10	130	37	14	8	38	1.77
74105--74156	20	2.6	20	93	0	86	26	17	13	42	1.86
73711--74879	22	53.7	22	68	15	293	35	16	10	37	1.83
75441--75506	31	2.1	31	81	10	73	46	6	21	25	1.74

Tables:   1

The End!