Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01016406.1 Corchorus capsularis cultivar CVL-1 contig16427, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  70478

Tables:   1   

This is table  1  of  1  ( 41 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
60--154
32
3.2
32
61
25
80
41
13
17
27
1.88
52--166
57
2.0
57
100
0
230
41
15
15
26
1.87
1248--1287
15
2.7
15
92
3
64
52
0
0
47
1.00
3449--3494
24
1.9
24
86
0
65
54
6
2
36
1.39
5057--5439
48
7.8
47
75
7
264
33
17
26
22
1.96
8616--8664
20
2.4
20
93
3
80
44
30
12
12
1.78
11977--12009
16
2.1
16
100
0
66
57
0
24
18
1.40
12024--12476
70
6.5
70
92
0
726
43
8
19
28
1.80
12078--12193
31
3.5
31
72
24
110
45
6
19
28
1.74
12208--12477
31
8.0
30
67
26
109
43
8
18
28
1.80
12490--12637
40
3.7
40
90
1
235
50
10
14
25
1.74
12641--13083
41
10.8
41
90
2
685
45
10
21
22
1.81
13079--13378
32
8.8
34
80
16
327
43
7
21
28
1.79
13079--13369
68
4.3
68
95
0
512
42
6
21
28
1.78
14002--14063
30
2.0
31
96
3
117
32
19
30
17
1.95
18449--18474
10
2.6
10
100
0
52
19
0
19
61
1.35
21492--21525
14
2.4
14
90
9
52
41
8
2
47
1.50
22881--22954
27
2.6
29
82
8
98
52
5
2
39
1.38
23600--23754
77
2.0
77
97
0
292
45
9
12
32
1.75
27097--27188
42
2.2
42
94
0
157
26
5
13
55
1.59
36365--36397
16
2.0
17
88
5
50
45
0
0
54
0.99
36603--36643
18
2.4
18
84
8
50
46
4
19
29
1.71
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40427--40452
2
13.0
2
100
0
52
50
0
0
50
1.00
40561--40615
25
2.1
27
83
9
71
72
3
5
18
1.18
43587--43662
8
9.0
8
77
11
62
75
1
2
21
1.00
43587--43634
17
2.9
17
81
3
62
75
0
4
20
0.97
43610--43661
19
2.8
19
82
5
54
75
1
1
21
1.00
43621--43663
4
11.0
4
80
5
52
74
2
0
23
0.93
45181--45241
27
2.3
26
80
8
77
21
21
16
40
1.91
45805--46157
113
3.1
112
88
4
480
34
15
22
26
1.95
45805--46295
113
4.4
110
84
6
408
35
18
21
25
1.95
49088--49333
114
2.2
112
88
2
359
36
21
18
23
1.95
52253--52292
21
1.9
21
89
0
62
25
45
10
20
1.81
52460--52513
22
2.4
23
84
3
74
33
1
7
57
1.37
52549--52583
10
3.9
9
89
10
54
25
0
11
62
1.28
57673--57738
33
2.0
33
91
2
107
10
36
42
10
1.74
57675--57751
33
2.3
32
84
6
91
10
36
41
11
1.76
64335--64431
18
5.4
17
85
4
113
37
42
12
8
1.73
68839--68900
32
1.9
32
86
0
88
19
38
35
6
1.77
69033--69103
32
2.2
32
92
0
115
12
38
38
11
1.79
69157--69199
14
3.2
13
83
9
59
25
2
4
67
1.22

Tables:   1

The End!