Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01016412.1 Corchorus capsularis cultivar CVL-1 contig16433, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  66254

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
564--603
18
2.2
18
86
0
53
55
5
2
37
1.35
615--652
18
2.1
19
85
5
51
50
0
2
47
1.15
626--665
22
1.9
20
85
10
53
45
0
5
50
1.23
758--801
22
2.0
22
100
0
88
36
0
27
36
1.57
13735--13971
22
10.7
22
66
15
60
38
13
10
37
1.79
13938--14039
23
4.5
22
77
7
80
39
12
6
41
1.70
14127--14208
22
3.7
22
70
12
69
42
12
9
35
1.75
14202--14252
19
2.7
19
81
0
66
19
25
11
43
1.85
14330--14496
88
1.9
88
82
2
210
34
12
9
43
1.75
14328--14889
22
26.0
22
69
12
177
35
16
9
38
1.81
14864--14911
22
2.2
22
81
7
53
35
25
10
29
1.89
16190--16484
109
2.6
109
91
4
457
49
1
11
37
1.48
22118--22150
11
3.0
11
91
8
50
42
0
3
54
1.15
22311--22360
24
2.1
24
100
0
100
28
8
20
44
1.79
22742--22777
16
2.2
16
95
0
63
44
13
0
41
1.44
22851--22879
15
2.0
15
93
6
51
27
0
3
68
1.05
23761--23817
23
2.6
21
86
10
78
68
1
1
28
1.09
23766--23817
11
4.6
11
78
2
50
69
1
1
26
1.10
23999--24060
32
1.9
32
96
0
115
40
24
4
30
1.76
28908--28977
29
2.4
29
85
2
86
38
28
12
20
1.89
36234--36271
16
2.4
16
87
12
53
7
15
39
36
1.77
36639--36681
2
21.0
2
86
13
61
48
4
0
46
1.22
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
36639--36681
17
2.5
17
96
0
77
48
4
0
46
1.22
36646--36674
15
1.9
15
100
0
58
48
3
0
48
1.18
37850--37969
60
2.0
60
98
0
231
27
16
25
30
1.97
38343--38392
25
2.0
26
88
4
75
42
12
26
20
1.86
42020--42048
13
2.3
13
94
5
51
89
10
0
0
0.48
53265--53309
22
2.2
20
84
8
54
60
26
0
13
1.34
56504--56534
2
15.0
2
93
6
53
48
0
3
48
1.17
60575--60688
33
3.6
30
80
10
120
40
16
10
32
1.83
60724--60832
33
3.3
33
83
5
157
41
20
11
26
1.87
60699--60839
66
2.1
66
93
0
210
41
19
10
29
1.85
62337--62362
5
5.2
5
100
0
52
19
0
0
80
0.71
64461--64491
2
15.5
2
93
0
53
48
3
0
48
1.17

Tables:   1

The End!