Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01016415.1 Corchorus capsularis cultivar CVL-1 contig16436, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1807
ACGTcount: A:0.34, C:0.18, G:0.17, T:0.31


Found at i:811 original size:24 final size:24

Alignment explanation


    Indices: 767--813  Score: 69
    Period size: 24  Copynumber: 2.0  Consensus size: 24

        757 AATCATTCTT

                                    
        767 AAAAATTCAAAGCAATCATCAATC
          1 AAAAATTCAAAGCAATCATCAATC

                       *            
        791 AAAAA-TCAAATCAATCGATCAAT
          1 AAAAATTCAAAGCAATC-ATCAAT

        814 ATGTGCATAT


Statistics
Matches: 21,  Mismatches: 1, Indels: 2
        0.88            0.04        0.08

Matches are distributed among these distances:
  23   10  0.48
  24   11  0.52

ACGTcount: A:0.55, C:0.19, G:0.04, T:0.21


Consensus pattern (24 bp):   
AAAAATTCAAAGCAATCATCAATC

Found at i:1459 original size:21 final size:21

Alignment explanation


    Indices: 1435--1476  Score: 57
    Period size: 21  Copynumber: 2.0  Consensus size: 21

       1425 TAACTCGGCA

                       *         
       1435 TGGCGCGGCAGTGGCTCGTGG
          1 TGGCGCGGCAGAGGCTCGTGG

                *           *    
       1456 TGGCTCGGCAGAGGCTGGTGG
          1 TGGCGCGGCAGAGGCTCGTGG

       1477 CGTCCGGACA


Statistics
Matches: 18,  Mismatches: 3, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
  21   18  1.00

ACGTcount: A:0.07, C:0.21, G:0.52, T:0.19


Consensus pattern (21 bp):   
TGGCGCGGCAGAGGCTCGTGG
Done.