genome.fa.s16419.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01016419.1 Corchorus capsularis cultivar CVL-1 contig16440, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  72005

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11000--11029	15	2.0	15	100	0	60	66	6	13	13	1.43
11011--11055	20	2.2	20	84	4	54	66	8	8	15	1.43
27077--27125	23	2.1	24	84	3	64	22	2	16	59	1.47
34211--34259	12	4.1	12	81	7	64	20	0	18	61	1.35
34211--34262	16	3.0	16	77	11	50	21	0	19	59	1.38
34218--34279	23	2.7	23	94	2	106	20	1	19	58	1.48
37333--37528	27	7.2	27	75	12	150	21	20	3	54	1.58
37476--37566	37	2.4	36	81	13	96	16	24	2	57	1.51
37449--37623	65	2.7	64	83	11	191	17	24	2	55	1.54
37575--37881	166	1.8	166	93	4	530	20	19	4	54	1.63
37798--38041	22	11.3	22	70	16	136	23	20	5	50	1.68
37858--38118	107	2.5	103	81	9	304	24	20	5	49	1.69
38055--38090	15	2.5	15	90	4	56	22	13	5	58	1.56
38072--38331	20	14.1	20	67	20	111	21	23	6	49	1.72
38162--38191	15	2.0	15	93	0	51	23	30	6	40	1.80
38057--38314	35	7.1	35	69	15	143	21	22	6	49	1.72
38177--38331	20	8.2	20	71	16	116	20	24	5	49	1.71
38177--38327	55	2.8	55	80	3	171	21	24	5	48	1.72
39677--39715	19	2.1	19	100	0	78	43	20	30	5	1.73
43163--43242	28	2.8	29	88	7	119	13	17	21	47	1.82
47793--47818	2	13.0	2	100	0	52	50	0	0	50	1.00
48979--49050	36	2.0	36	100	0	144	19	8	13	58	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49710--50079	123	3.0	123	98	0	713	25	20	9	44	1.82
56080--56109	12	2.6	12	94	5	53	60	26	10	3	1.45
63052--63128	33	2.4	33	86	4	104	29	14	14	41	1.85
67285--67580	109	2.7	109	90	4	450	37	10	1	50	1.48
69838--69871	16	2.1	16	100	0	68	47	17	23	11	1.81

Tables:   1

The End!