Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01016423.1 Corchorus capsularis cultivar CVL-1 contig16444, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  67273

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
13257--13293
13
2.8
13
83
0
56
67
2
0
29
1.04
15072--15126
16
3.5
15
80
9
56
49
32
9
9
1.66
15506--15533
11
2.5
11
100
0
56
67
0
0
32
0.91
16138--16162
13
1.9
13
100
0
50
16
28
8
48
1.74
18802--18849
3
16.3
3
95
4
89
35
0
0
64
0.94
26408--26497
45
2.0
45
97
0
171
34
20
21
24
1.96
26909--27005
48
2.0
48
100
0
194
16
26
4
52
1.62
32262--32299
11
3.5
11
89
10
51
39
0
2
57
1.12
32324--32384
30
2.0
30
96
0
113
42
11
6
39
1.67
37483--37782
149
2.0
149
97
0
564
25
25
24
25
2.00
39326--39465
33
4.2
32
85
3
145
10
28
40
20
1.85
44795--44824
10
3.1
10
95
4
53
16
0
10
73
1.09
45853--45951
33
3.0
33
82
4
112
11
29
39
20
1.87
46353--46411
22
2.7
21
82
7
73
40
0
6
52
1.28
46363--46395
14
2.3
15
89
5
50
42
0
6
51
1.26
46331--46410
44
1.9
40
87
10
115
41
0
5
53
1.22
46449--46489
2
21.0
2
80
14
50
51
2
2
43
1.28
47654--47718
30
2.1
31
82
2
78
49
6
15
29
1.68
47747--47810
2
34.5
2
71
25
52
45
0
4
50
1.22
55231--55271
18
2.3
18
87
8
57
56
2
19
21
1.54
62758--62864
23
4.4
23
74
15
90
48
8
6
36
1.59
62824--62936
53
2.1
53
90
1
172
51
7
6
35
1.54

Tables:   1

The End!