Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01016424.1 Corchorus capsularis cultivar CVL-1 contig16445, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  28123

Tables:   1   

This is table  1  of  1  ( 10 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2474--2728
121
2.0
124
90
9
399
41
11
14
32
1.82
3625--4087
229
2.0
229
98
0
899
34
16
12
36
1.86
5372--5406
18
1.9
18
100
0
70
28
17
25
28
1.97
11362--11409
23
2.1
23
100
0
96
35
22
8
33
1.84
15927--15987
30
2.0
32
87
6
90
18
22
4
54
1.63
16960--17024
31
2.1
31
94
0
112
43
21
13
21
1.87
19963--19990
13
2.2
13
100
0
56
32
21
7
39
1.80
22621--22705
42
2.0
40
86
13
118
38
11
16
32
1.85
23598--23831
108
2.2
108
95
3
418
39
11
1
47
1.50
25907--25947
2
20.5
2
100
0
82
0
51
0
48
1.00

Tables:   1

The End!