Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01016426.1 Corchorus capsularis cultivar CVL-1 contig16447, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  59413

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
496--531
1
36.0
1
100
0
72
0
0
0
100
0.00
551--612
32
1.9
32
100
0
124
29
14
12
43
1.83
771--878
47
2.2
48
81
6
119
42
11
3
42
1.58
993--1022
13
2.3
13
94
0
51
60
0
3
36
1.14
1283--1336
27
1.9
29
88
7
85
16
12
9
61
1.56
1320--1376
29
1.9
29
85
3
78
29
12
7
50
1.66
1543--1708
31
5.4
31
85
0
215
33
24
22
19
1.97
3794--3848
28
2.0
28
85
7
76
45
5
14
34
1.68
5550--5588
21
1.9
21
89
5
62
33
2
7
56
1.41
11110--11438
141
2.3
141
91
1
525
36
10
10
41
1.74
11692--11745
27
1.9
29
92
7
94
35
11
12
40
1.79
12650--12976
137
2.4
139
85
4
437
37
11
8
42
1.72
13156--13552
211
1.9
210
90
4
638
46
9
10
33
1.69
14859--15231
189
2.0
187
93
2
631
44
10
6
38
1.64
15836--15860
13
1.9
13
100
0
50
60
8
8
24
1.52
16033--16082
25
2.0
25
96
0
91
42
2
16
40
1.59
16693--16925
107
2.2
107
88
0
349
44
8
6
40
1.62
21120--21148
2
14.5
2
100
0
58
51
0
0
48
1.00
21424--21474
15
3.3
15
70
24
52
52
13
9
23
1.70
21414--21475
31
2.0
31
100
0
124
51
16
9
22
1.73
34460--34501
3
14.0
3
100
0
84
33
0
0
66
0.92
41957--42018
3
20.7
3
89
0
97
64
1
1
32
1.13
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
53567--53617
1
51.0
1
96
0
84
96
0
0
3
0.24
57669--57724
28
2.0
28
82
0
67
44
21
8
25
1.81

Tables:   1

The End!