Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01016429.1 Corchorus capsularis cultivar CVL-1 contig16450, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  58127

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
903--974
29
2.4
30
84
9
85
43
15
16
25
1.87
2685--2723
18
2.3
17
91
8
62
69
0
10
20
1.17
2809--2873
29
2.2
31
83
10
82
21
21
15
41
1.90
10979--11083
6
17.5
6
79
11
90
7
20
31
40
1.80
10974--11071
24
4.1
24
95
0
151
10
17
31
40
1.83
10979--11083
24
4.4
24
91
2
149
7
20
31
40
1.80
15672--15702
7
4.4
7
95
0
53
3
29
9
58
1.46
17501--17565
29
2.2
30
91
2
105
18
27
18
35
1.94
24802--24827
12
2.2
12
100
0
52
30
7
0
61
1.24
24807--24840
18
1.9
17
88
5
50
38
2
0
58
1.13
35399--35748
99
3.5
99
93
0
583
24
24
25
25
2.00
35512--35677
51
3.3
50
67
17
146
25
24
24
24
2.00
37282--37340
27
2.2
27
90
0
91
30
33
15
20
1.93
40875--41104
112
2.1
112
98
0
442
46
13
16
24
1.82
44771--44803
16
2.1
16
94
0
57
33
21
15
30
1.94
46241--46284
1
44.0
1
81
0
52
90
0
9
0
0.44
46453--46490
11
3.5
11
85
10
51
57
2
0
39
1.12
47169--47307
31
4.6
31
81
3
149
30
25
27
15
1.96
47810--47847
11
3.5
11
85
10
51
57
2
0
39
1.12
48677--48942
107
2.5
107
97
0
496
39
8
9
42
1.67
55015--55236
109
2.0
109
92
3
372
45
13
9
31
1.76

Tables:   1

The End!