Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01001643.1 Corchorus capsularis cultivar CVL-1 contig01643, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3040
ACGTcount: A:0.30, C:0.18, G:0.20, T:0.32


Found at i:1375 original size:17 final size:17

Alignment explanation


    Indices: 1331--1363  Score: 57
    Period size: 17  Copynumber: 1.9  Consensus size: 17

       1321 CTCATAGTAC

                    *        
       1331 CTAGGTAGTATGAGGTA
          1 CTAGGTAGCATGAGGTA

                            
       1348 CTAGGTAGCATGAGGT
          1 CTAGGTAGCATGAGGT

       1364 GATAGGTTGC


Statistics
Matches: 15,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  17   15  1.00

ACGTcount: A:0.27, C:0.09, G:0.36, T:0.27


Consensus pattern (17 bp):   
CTAGGTAGCATGAGGTA
Done.