Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWWV01016430.1 Corchorus capsularis cultivar CVL-1 contig16451, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 35392
ACGTcount: A:0.33, C:0.19, G:0.17, T:0.32
Found at i:195 original size:22 final size:22
Alignment explanation
Indices: 56--195 Score: 106
Period size: 22 Copynumber: 6.3 Consensus size: 22
46 TTGTGATAAT
*
56 TAACCA-CCTTATGAAATTTCAA
1 TAACCATCC-TATGAAATTTTAA
* * *
78 TAACCAACCTAAGAGATTTTAA
1 TAACCATCCTATGAAATTTTAA
**
100 TAACCTGATCCTATGAAATTTTGG
1 TAACC--ATCCTATGAAATTTTAA
* *
124 TAACCA-CACTATGGAATTTTGA
1 TAACCATC-CTATGAAATTTTAA
* *
146 TAACC-TTCTCATGAAATTATAA
1 TAACCATCCT-ATGAAATTTTAA
* *
168 TAACCATCTTATGAAATTTTGA
1 TAACCATCCTATGAAATTTTAA
190 TAACCA
1 TAACCA
196 CATGGAGACA
Statistics
Matches: 93, Mismatches: 18, Indels: 14
0.74 0.14 0.11
Matches are distributed among these distances:
21 3 0.03
22 69 0.74
23 4 0.04
24 17 0.18
ACGTcount: A:0.39, C:0.19, G:0.09, T:0.34
Consensus pattern (22 bp):
TAACCATCCTATGAAATTTTAA
Found at i:398 original size:19 final size:20
Alignment explanation
Indices: 367--404 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
357 TATTGACATT
367 TAAAAATTGAAA-TCAAAAG
1 TAAAAATTGAAATTCAAAAG
386 TAAAATATT-AAATTCAAAA
1 TAAAA-ATTGAAATTCAAAA
405 AATAATAGTA
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 8 0.47
20 9 0.53
ACGTcount: A:0.63, C:0.05, G:0.05, T:0.26
Consensus pattern (20 bp):
TAAAAATTGAAATTCAAAAG
Found at i:751 original size:32 final size:33
Alignment explanation
Indices: 714--782 Score: 81
Period size: 32 Copynumber: 2.2 Consensus size: 33
704 TTTAGTAATG
* *
714 ACAATTTAGAAAT-ATGTTTTAAAGAA-AATGGT
1 ACAATTTAGAAATAATATTTTAAA-AATAAGGGT
*
746 ACAA-TTGGAAATAATATTTTAAAAATAAGGGT
1 ACAATTTAGAAATAATATTTTAAAAATAAGGGT
778 ACAAT
1 ACAAT
783 CAGAAAACAT
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
31 9 0.29
32 22 0.71
ACGTcount: A:0.49, C:0.04, G:0.14, T:0.32
Consensus pattern (33 bp):
ACAATTTAGAAATAATATTTTAAAAATAAGGGT
Found at i:896 original size:10 final size:10
Alignment explanation
Indices: 883--907 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
873 ATACAATTAT
883 ATATAGAATA
1 ATATAGAATA
893 ATATAGAATA
1 ATATAGAATA
903 ATATA
1 ATATA
908 TCTTCTTATA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.60, C:0.00, G:0.08, T:0.32
Consensus pattern (10 bp):
ATATAGAATA
Found at i:5473 original size:2 final size:2
Alignment explanation
Indices: 5468--5504 Score: 67
Period size: 2 Copynumber: 19.0 Consensus size: 2
5458 AGAAAAAATG
5468 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA -A GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
5505 TAGACAGTGA
Statistics
Matches: 34, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 33 0.97
ACGTcount: A:0.51, C:0.00, G:0.49, T:0.00
Consensus pattern (2 bp):
GA
Found at i:6816 original size:31 final size:30
Alignment explanation
Indices: 6778--6946 Score: 103
Period size: 31 Copynumber: 5.6 Consensus size: 30
6768 TTTGGCTAAT
6778 TGTTCAAATAAGGGCCTAACGTTTGATAAAA
1 TGTTCAAATAAGGGCCTAACGTTTG-TAAAA
* * **
6809 TGTTCAAATAAGGGTCTGATC-TTT-TAATT
1 TGTTCAAATAAGGGCCT-AACGTTTGTAAAA
* * *
6838 TGGTCAAATAAGGGCCTAACGGTTGCCAAAA
1 TGTTCAAATAAGGGCCTAACGTTTG-TAAAA
* * ***
6869 TGCTCAAATAAGGGCCTGATC-TTTG-AGTT
1 TGTTCAAATAAGGGCCT-AACGTTTGTAAAA
** ** *
6898 TGGCCAAATAAGAACCTAACGTTTGCCAAAA
1 TGTTCAAATAAGGGCCTAACGTTTG-TAAAA
*
6929 TGCTCAAATAAGGGCCTA
1 TGTTCAAATAAGGGCCTA
6947 TCTCATGCGC
Statistics
Matches: 101, Mismatches: 29, Indels: 16
0.69 0.20 0.11
Matches are distributed among these distances:
28 4 0.04
29 38 0.38
31 55 0.54
32 4 0.04
ACGTcount: A:0.34, C:0.17, G:0.21, T:0.28
Consensus pattern (30 bp):
TGTTCAAATAAGGGCCTAACGTTTGTAAAA
Found at i:6876 original size:60 final size:60
Alignment explanation
Indices: 6781--6949 Score: 241
Period size: 60 Copynumber: 2.8 Consensus size: 60
6771 GGCTAATTGT
** * * *
6781 TCAAATAAGGGCCTAACGTTTGATAAAATGTTCAAATAAGGGTCTGATCTTTTAATTTGG
1 TCAAATAAGGGCCTAACGTTTGCCAAAATGCTCAAATAAGGGCCTGATCTTTGAATTTGG
* *
6841 TCAAATAAGGGCCTAACGGTTGCCAAAATGCTCAAATAAGGGCCTGATCTTTGAGTTTGG
1 TCAAATAAGGGCCTAACGTTTGCCAAAATGCTCAAATAAGGGCCTGATCTTTGAATTTGG
* **
6901 CCAAATAAGAACCTAACGTTTGCCAAAATGCTCAAATAAGGGCCT-ATCT
1 TCAAATAAGGGCCTAACGTTTGCCAAAATGCTCAAATAAGGGCCTGATCT
6950 CATGCGCCAT
Statistics
Matches: 98, Mismatches: 11, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
59 4 0.04
60 94 0.96
ACGTcount: A:0.34, C:0.18, G:0.20, T:0.28
Consensus pattern (60 bp):
TCAAATAAGGGCCTAACGTTTGCCAAAATGCTCAAATAAGGGCCTGATCTTTGAATTTGG
Found at i:7013 original size:31 final size:31
Alignment explanation
Indices: 6975--7047 Score: 110
Period size: 31 Copynumber: 2.4 Consensus size: 31
6965 CTGACACCAG
6975 ACCCTTATTTGAGCATTTTCGATAACGTTAA
1 ACCCTTATTTGAGCATTTTCGATAACGTTAA
* * *
7006 ACCCTTATTTGAGTATTTTTGATAACGTTAG
1 ACCCTTATTTGAGCATTTTCGATAACGTTAA
*
7037 GCCCTTATTTG
1 ACCCTTATTTG
7048 GCCAAATTAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 38 1.00
ACGTcount: A:0.25, C:0.18, G:0.15, T:0.42
Consensus pattern (31 bp):
ACCCTTATTTGAGCATTTTCGATAACGTTAA
Found at i:8353 original size:15 final size:15
Alignment explanation
Indices: 8318--8357 Score: 53
Period size: 15 Copynumber: 2.6 Consensus size: 15
8308 GATAGTTTTC
*
8318 TCGGGTTATTCAGGTT
1 TCGGGTTA-TCAGGGT
*
8334 TCGGGTTATCTGGGT
1 TCGGGTTATCAGGGT
8349 TCGGGTTAT
1 TCGGGTTAT
8358 TCGGGTTTCG
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 14 0.64
16 8 0.36
ACGTcount: A:0.10, C:0.12, G:0.35, T:0.42
Consensus pattern (15 bp):
TCGGGTTATCAGGGT
Found at i:8388 original size:16 final size:16
Alignment explanation
Indices: 8316--8435 Score: 95
Period size: 16 Copynumber: 7.6 Consensus size: 16
8306 CAGATAGTTT
* *
8316 TCTCGGGTTATTCAGG
1 TCTCGGGTCATTCGGG
* *
8332 TTTCGGGTTA-TCTGGG
1 TCTCGGGTCATTC-GGG
*
8348 T-TCGGGTTATTCGGG
1 TCTCGGGTCATTCGGG
* *
8363 TTTCGAGTCATTCGGG
1 TCTCGGGTCATTCGGG
*
8379 TCTCGGGTCATAT-GGC
1 TCTCGGGTCAT-TCGGG
* *
8395 TCTCGGATCATTCAGG
1 TCTCGGGTCATTCGGG
8411 T-TCCGGGTCATTCGGG
1 TCT-CGGGTCATTCGGG
8427 TCTCGGGTC
1 TCTCGGGTC
8436 TACCAGATCT
Statistics
Matches: 85, Mismatches: 12, Indels: 14
0.77 0.11 0.13
Matches are distributed among these distances:
15 16 0.19
16 67 0.79
17 2 0.02
ACGTcount: A:0.10, C:0.21, G:0.33, T:0.36
Consensus pattern (16 bp):
TCTCGGGTCATTCGGG
Found at i:9259 original size:13 final size:13
Alignment explanation
Indices: 9241--9270 Score: 53
Period size: 12 Copynumber: 2.4 Consensus size: 13
9231 TGAATAAAAG
9241 ATAATTTTAGTTT
1 ATAATTTTAGTTT
9254 ATAA-TTTAGTTT
1 ATAATTTTAGTTT
9266 ATAAT
1 ATAAT
9271 ATCTTCGGGT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
12 12 0.75
13 4 0.25
ACGTcount: A:0.37, C:0.00, G:0.07, T:0.57
Consensus pattern (13 bp):
ATAATTTTAGTTT
Found at i:9326 original size:9 final size:8
Alignment explanation
Indices: 9313--9431 Score: 65
Period size: 7 Copynumber: 14.9 Consensus size: 8
9303 TATTCGGGTT
9313 TCGGGTCA
1 TCGGGTCA
9321 TACGGGTC-
1 T-CGGGTCA
9329 TCGGGTCA
1 TCGGGTCA
*
9337 CTCGGGTTA
1 -TCGGGTCA
9346 -CGGGTCA
1 TCGGGTCA
* *
9353 TTCAGGT-T
1 -TCGGGTCA
9361 TCGGGTCA
1 TCGGGTCA
*
9369 TCTGGGTTA
1 TC-GGGTCA
*
9378 -CGGATCA
1 TCGGGTCA
9385 TGCGGGTC-
1 T-CGGGTCA
9393 TCGGGTCA
1 TCGGGTCA
9401 TCTGGGT--
1 TC-GGGTCA
9408 TGCGGGTCA
1 T-CGGGTCA
9417 TTCGGGTC-
1 -TCGGGTCA
9425 TCGGGTC
1 TCGGGTC
9432 GGACAGGTTC
Statistics
Matches: 86, Mismatches: 10, Indels: 31
0.68 0.08 0.24
Matches are distributed among these distances:
7 39 0.45
8 9 0.10
9 37 0.43
10 1 0.01
ACGTcount: A:0.10, C:0.23, G:0.38, T:0.29
Consensus pattern (8 bp):
TCGGGTCA
Found at i:9332 original size:16 final size:14
Alignment explanation
Indices: 9306--9431 Score: 99
Period size: 16 Copynumber: 7.9 Consensus size: 14
9296 CTCAGGTTAT
9306 TCGGGTTTCGGGTCA
1 TCGGG-TTCGGGTCA
9321 TACGGGTCTCGGGTCA
1 T-CGGGT-TCGGGTCA
9337 CTCGGGTTACGGGTCA
1 -TCGGGTT-CGGGTCA
*
9353 TTCAGGTTTCGGGTCA
1 -TC-GGGTTCGGGTCA
*
9369 TCTGGGTTACGGATCA
1 TC-GGGTT-CGGGTCA
9385 TGCGGGTCTCGGGTCA
1 T-CGGGT-TCGGGTCA
9401 TCTGGGTTGCGGGTCA
1 TC-GGGTT-CGGGTCA
9417 TTCGGGTCTCGGGTC
1 -TCGGGT-TCGGGTC
9432 GGACAGGTTC
Statistics
Matches: 93, Mismatches: 6, Indels: 23
0.76 0.05 0.19
Matches are distributed among these distances:
15 11 0.12
16 72 0.77
17 10 0.11
ACGTcount: A:0.10, C:0.22, G:0.38, T:0.30
Consensus pattern (14 bp):
TCGGGTTCGGGTCA
Found at i:9342 original size:32 final size:32
Alignment explanation
Indices: 9308--9431 Score: 169
Period size: 32 Copynumber: 3.9 Consensus size: 32
9298 CAGGTTATTC
* *
9308 GGGTTTCGGGTCATACGGGTCTCGGGTCA-CT
1 GGGTTACGGGTCATTCGGGTCTCGGGTCATCT
* *
9339 CGGGTTACGGGTCATTCAGGTTTCGGGTCATCT
1 -GGGTTACGGGTCATTCGGGTCTCGGGTCATCT
* *
9372 GGGTTACGGATCATGCGGGTCTCGGGTCATCT
1 GGGTTACGGGTCATTCGGGTCTCGGGTCATCT
*
9404 GGGTTGCGGGTCATTCGGGTCTCGGGTC
1 GGGTTACGGGTCATTCGGGTCTCGGGTC
9432 GGACAGGTTC
Statistics
Matches: 80, Mismatches: 11, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
32 78 0.98
33 2 0.03
ACGTcount: A:0.10, C:0.22, G:0.39, T:0.30
Consensus pattern (32 bp):
GGGTTACGGGTCATTCGGGTCTCGGGTCATCT
Found at i:9364 original size:48 final size:47
Alignment explanation
Indices: 9295--9431 Score: 138
Period size: 48 Copynumber: 2.9 Consensus size: 47
9285 TGGGTTAACT
* *
9295 TCTCAGGTTATTCGGGTTTCGGGTCATACGGGTCTCGGGTCACT-CGGG
1 TCTCGGGTCATTCGGGTTTCGGGTCAT-CGGGTCTCGGGTCA-TGCGGG
* *
9343 T-TACGGGTCATTCAGGTTTCGGGTCATCTGGGT-TACGGATCATGCGGG
1 TCT-CGGGTCATTCGGGTTTCGGGTCATC-GGGTCT-CGGGTCATGCGGG
*
9391 TCTCGGGTCA-TCTGGGTTGCGGGTCATTCGGGTCTCGGGTC
1 TCTCGGGTCATTC-GGGTTTCGGGTCA-TCGGGTCTCGGGTC
9432 GGACAGGTTC
Statistics
Matches: 74, Mismatches: 7, Indels: 16
0.76 0.07 0.16
Matches are distributed among these distances:
47 6 0.08
48 64 0.86
49 4 0.05
ACGTcount: A:0.10, C:0.22, G:0.36, T:0.31
Consensus pattern (47 bp):
TCTCGGGTCATTCGGGTTTCGGGTCATCGGGTCTCGGGTCATGCGGG
Found at i:23072 original size:2 final size:2
Alignment explanation
Indices: 23067--23091 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
23057 GACTTTTTTA
23067 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
23092 CAATAGTTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:23909 original size:165 final size:164
Alignment explanation
Indices: 23640--24080 Score: 602
Period size: 166 Copynumber: 2.7 Consensus size: 164
23630 ATGAGGAGCG
* *
23640 AGAGAACTAATTTTTTTCGTCTTTTCAC-ACTTGACCGATTACTTAAATGCCCTAACTTTTGATT
1 AGAGAACTAATTTTTTTCGTCTTTTC-CTACTTGACAGATTACTTAAATGTCCTAACTTTTGATT
* * * *
23704 CTTGAGGTGATTAAATAGCTAGAC-TTTTGGTCATTTCTCAATTGATTTTAATAGAGTAGTGAAA
65 ATTGAGG-GATTAAATAACTA-ACTTTTTGGTCATTTCTCAATTGACTTGAATAGAGTAGTGAAA
* * * * **
23768 TTACTAAATGATCC-CTACCAAGGCTTGCTTTTGGAGTT
128 TTAATAAAAGATCCAC-ACCAAGGATTGATGAT-GAGTT
*
23806 AGAGAACTTATTTTTTTCGTCTTTTCCTACTTGACAGATTACTTAAATGTCCTAAC-TTTGATTA
1 AGAGAACTAATTTTTTTCGTCTTTTCCTACTTGACAGATTACTTAAATGTCCTAACTTTTGATTA
* * *
23870 TTGAGGGATTAAATAAATAATCTTTTTGGTCATTTCTCAATGGACTTGAATAGAGTAGTGGAATT
66 TTGAGGGATTAAATAACTAA-CTTTTTGGTCATTTCTCAATTGACTTGAATAGAGTAGTGAAATT
*
23935 AATAAAAGATCCACATCAAGGATTGATGATGAGTT
130 AATAAAAGATCCACACCAAGGATTGATGATGAGTT
* * *
23970 AGAGAACTAATCTTTTTCGTCTTTACCTATTTGACAGATTACTTAAATGTCCTAACTTTTGATTA
1 AGAGAACTAATTTTTTTCGTCTTTTCCTACTTGACAGATTACTTAAATGTCCTAACTTTTGATTA
24035 TTGAGGGGATTAAATAACTAAACTTTTTGGTCATTTCTCAATTGAC
66 TTGA-GGGATTAAATAACT-AACTTTTTGGTCATTTCTCAATTGAC
24081 AAATGACTCA
Statistics
Matches: 245, Mismatches: 23, Indels: 14
0.87 0.08 0.05
Matches are distributed among these distances:
163 1 0.00
164 69 0.28
165 85 0.35
166 88 0.36
167 2 0.01
ACGTcount: A:0.30, C:0.15, G:0.16, T:0.40
Consensus pattern (164 bp):
AGAGAACTAATTTTTTTCGTCTTTTCCTACTTGACAGATTACTTAAATGTCCTAACTTTTGATTA
TTGAGGGATTAAATAACTAACTTTTTGGTCATTTCTCAATTGACTTGAATAGAGTAGTGAAATTA
ATAAAAGATCCACACCAAGGATTGATGATGAGTT
Found at i:27404 original size:39 final size:40
Alignment explanation
Indices: 27359--27469 Score: 145
Period size: 39 Copynumber: 2.8 Consensus size: 40
27349 TCTCTCTCCC
*
27359 CAAAGTCCCCAAACACATATAACACAGGGGCAACTCT-CT
1 CAAAGTCCCCAAACACATATAACACAGGGGCAACTATACT
* * *
27398 CAAAGTCCTCAAACACATATAACACAGAGGCATCTATACT
1 CAAAGTCCCCAAACACATATAACACAGGGGCAACTATACT
* * *
27438 -AAAGGCCCTAAACACATATAACACAAGGGCAA
1 CAAAGTCCCCAAACACATATAACACAGGGGCAA
27470 TTTTCTTCTC
Statistics
Matches: 61, Mismatches: 10, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
39 59 0.97
40 2 0.03
ACGTcount: A:0.43, C:0.29, G:0.13, T:0.15
Consensus pattern (40 bp):
CAAAGTCCCCAAACACATATAACACAGGGGCAACTATACT
Found at i:29452 original size:163 final size:163
Alignment explanation
Indices: 29177--29488 Score: 579
Period size: 163 Copynumber: 1.9 Consensus size: 163
29167 AGAAAGTCAA
* * *
29177 AAATGCCCTTATAAGTTTGTGAGAATAACAATAAAACCTAGATTGAAATGACCAAATAACCAAAC
1 AAATGCCCTTATAAGTTTGTGAGAATAACAAAAAAAACTAGATCGAAATGACCAAATAACCAAAC
*
29242 TCAATATTAACCAAATTAATGATGTTTGATCTTCAGACCGGTTTACATGTAATTTCACTTCCTCC
66 TCAATATTAACCAAATTAATGATGTTTGATCTTCAGACCGATTTACATGTAATTTCACTTCCTCC
29307 TCTTATGGTTTGTTATAATGTTAATTATATTAT
131 TCTTATGGTTTGTTATAATGTTAATTATATTAT
29340 AAATGCCCTTATAAGTTTGTGAGAATAACAAAAAAAACTAGATCGAAATGACCAAATAACCAAAC
1 AAATGCCCTTATAAGTTTGTGAGAATAACAAAAAAAACTAGATCGAAATGACCAAATAACCAAAC
29405 TCAATATTAACCAAATTAATGATGTTTGATCTTCAGACCGATTTACATGTAATTTCACTTCCTCC
66 TCAATATTAACCAAATTAATGATGTTTGATCTTCAGACCGATTTACATGTAATTTCACTTCCTCC
*
29470 TTTTATGGTTTGTTATAAT
131 TCTTATGGTTTGTTATAAT
29489 ATACAAACAC
Statistics
Matches: 144, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
163 144 1.00
ACGTcount: A:0.37, C:0.16, G:0.12, T:0.35
Consensus pattern (163 bp):
AAATGCCCTTATAAGTTTGTGAGAATAACAAAAAAAACTAGATCGAAATGACCAAATAACCAAAC
TCAATATTAACCAAATTAATGATGTTTGATCTTCAGACCGATTTACATGTAATTTCACTTCCTCC
TCTTATGGTTTGTTATAATGTTAATTATATTAT
Found at i:31333 original size:188 final size:188
Alignment explanation
Indices: 31016--31394 Score: 749
Period size: 188 Copynumber: 2.0 Consensus size: 188
31006 AACATAGCAA
31016 TATCCCCGAATTTCCTCTCTCTTATACATTGGCCTTCCCACATTGATCATAGATATTGCCCATAA
1 TATCCCCGAATTTCCTCTCTCTTATACATTGGCCTTCCCACATTGATCATAGATATTGCCCATAA
31081 AAGTTTAATCCCAATTATTATCCTAAACTACTTCTAAATTATCATTTTCCTTAGAAAAATTATTA
66 AAGTTTAATCCCAATTATTATCCTAAACTACTTCTAAATTATCATTTTCCTTAGAAAAATTATTA
*
31146 GACCTTAATTTAAAGTCTATAAAAATTAATAATGTCAAAGTTAATTATCTATACTAAT
131 GACCTTAATTTAAAGTCTATAAAAAATAATAATGTCAAAGTTAATTATCTATACTAAT
31204 TATCCCCGAATTTCCTCTCTCTTATACATTGGCCTTCCCACATTGATCATAGATATTGCCCATAA
1 TATCCCCGAATTTCCTCTCTCTTATACATTGGCCTTCCCACATTGATCATAGATATTGCCCATAA
31269 AAGTTTAATCCCAATTATTATCCTAAACTACTTCTAAATTATCATTTTCCTTAGAAAAATTATTA
66 AAGTTTAATCCCAATTATTATCCTAAACTACTTCTAAATTATCATTTTCCTTAGAAAAATTATTA
31334 GACCTTAATTTAAAGTCTATAAAAAATAATAATGTCAAAGTTAATTATCTATACTAAT
131 GACCTTAATTTAAAGTCTATAAAAAATAATAATGTCAAAGTTAATTATCTATACTAAT
31392 TAT
1 TAT
31395 AATTTGAAGT
Statistics
Matches: 190, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
188 190 1.00
ACGTcount: A:0.36, C:0.20, G:0.06, T:0.38
Consensus pattern (188 bp):
TATCCCCGAATTTCCTCTCTCTTATACATTGGCCTTCCCACATTGATCATAGATATTGCCCATAA
AAGTTTAATCCCAATTATTATCCTAAACTACTTCTAAATTATCATTTTCCTTAGAAAAATTATTA
GACCTTAATTTAAAGTCTATAAAAAATAATAATGTCAAAGTTAATTATCTATACTAAT
Done.