Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01016431.1 Corchorus capsularis cultivar CVL-1 contig16452, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6185
ACGTcount: A:0.35, C:0.16, G:0.15, T:0.35


Found at i:703 original size:54 final size:53

Alignment explanation


    Indices: 621--724  Score: 181
    Period size: 54  Copynumber: 1.9  Consensus size: 53

        611 TATCATTTCA

                           *                    *                 
        621 CAACAAAATTTGATTTCTTAACTGAATTTTTCTTAAGAGAATTTATAAAATTCG
          1 CAACAAAATTTGATTCCTTAACTGAA-TTTTCTTAAAAGAATTTATAAAATTCG

                                                              
        675 CAACAAAATTTGATTCCTTAACTGAATTTTCTTAAAAGAATTTATAAAAT
          1 CAACAAAATTTGATTCCTTAACTGAATTTTCTTAAAAGAATTTATAAAAT

        725 AAAAAAGCCG


Statistics
Matches: 48,  Mismatches: 2, Indels: 1
        0.94            0.04        0.02

Matches are distributed among these distances:
  53   23  0.48
  54   25  0.52

ACGTcount: A:0.41, C:0.12, G:0.08, T:0.39


Consensus pattern (53 bp):   
CAACAAAATTTGATTCCTTAACTGAATTTTCTTAAAAGAATTTATAAAATTCG
Done.