Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01016433.1 Corchorus capsularis cultivar CVL-1 contig16454, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  45600

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
841--874
8
4.1
8
85
7
50
58
14
2
23
1.50
2555--2668
33
3.6
31
81
5
122
32
11
16
39
1.84
9109--9140
16
2.0
16
100
0
64
12
12
25
50
1.75
15768--15833
34
2.0
33
81
3
78
39
12
18
30
1.87
21481--21585
40
2.6
40
82
5
106
27
20
9
42
1.82
23074--23130
20
2.8
20
84
10
62
68
1
10
19
1.28
24827--24876
12
4.2
12
84
0
64
54
14
6
26
1.63
26424--26558
47
2.9
47
96
1
243
35
20
17
26
1.95
26594--26684
37
2.4
38
81
1
112
29
18
21
29
1.97
26718--26775
15
3.6
15
76
17
62
32
25
1
39
1.66
26708--26776
34
2.0
34
94
0
120
31
26
4
37
1.76
26844--26892
19
2.6
19
100
0
98
34
32
4
28
1.76
26932--26960
15
1.9
15
100
0
58
20
17
20
41
1.90
27060--27168
8
14.9
8
71
19
71
26
21
4
47
1.70
26984--27199
22
10.0
22
79
8
212
28
22
4
44
1.71
27058--27359
14
20.3
14
66
24
108
29
21
4
44
1.73
27011--27192
86
2.1
84
90
6
278
28
21
4
45
1.71
27214--27368
22
6.8
22
72
11
100
31
22
4
41
1.74
27223--27359
30
4.6
29
68
20
77
30
22
4
42
1.73
31012--31043
14
2.2
15
94
5
57
15
9
25
50
1.74
32367--32419
17
3.1
17
72
0
52
32
20
16
30
1.95
32783--32851
3
22.3
3
86
8
95
33
1
1
63
1.12
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
32922--32957
2
18.5
2
94
5
65
50
0
0
50
1.00
32884--32949
34
1.9
33
85
11
89
43
4
1
50
1.32
34476--34508
17
1.9
17
100
0
66
18
12
12
57
1.64
42932--43107
40
4.5
39
79
12
166
34
17
15
32
1.91

Tables:   1

The End!